Chris Rhodes Week 14: Difference between revisions
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*How do your top ten significant genes relate to the GO terms? How do they relate to the experimental conditions? | *How do your top ten significant genes relate to the GO terms? How do they relate to the experimental conditions? | ||
*How do your results and hypothesis align with the paper you read? | *How do your results and hypothesis align with the paper you read? | ||
==Decreased GO Terms== | |||
#fructuronate reductase activity: | |||
#precorrin-3B C17-methyltransferase activity: | |||
#precorrin-2 C20-methyltransferase activity: | |||
#coniferyl-aldehyde dehydrogenase activity: | |||
#inositol-1(or 4)-monophosphatase activity: | |||
#trans-2-enoyl-CoA reductase (NADPH) activity: | |||
#aldehyde dehydrogenase [NAD(P)+] activity: | |||
#oxidoreductase activity: | |||
#inositol or phosphatidylinositol phosphatase activity: | |||
#cellular aldehyde metabolic process: | |||
==Increased GO Terms== | |||
#RNA metabolic process: | |||
#regulation of transcription: | |||
#regulation of nitrogen compound metabolic process: | |||
#regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process: | |||
#regulation of macromolecule biosynthetic process: | |||
#regulation of gene expression: | |||
#regulation of cellular macromolecule biosynthetic process: | |||
#regulation of cellular biosynthetic process: | |||
#regulation of biosynthetic process: | |||
#regulation of macromolecule metabolic process: | |||
==Top Ten Regulated Genes== | |||
==Links== | ==Links== | ||
{{Chris H. Rhodes}} | {{Chris H. Rhodes}} |
Revision as of 14:43, 5 December 2011
Files
Increased MAPPFinder Results XLS
Decreased MAPPFinder Results XLS
Increased MAPPFinder Results TXT
Decreased MAPPFinder Results TXT
Materials we need
- Table of significant genes at p< 0.05,0.01,0.001
- Top ten significant genes
- Top ten increased/decreased GO terms
- Make a list of the functions of the top ten genes.
- Take all of this data and hypothesize why under the conditions of the experiment they would be up or down regulated.
- How do your top ten significant genes relate to the GO terms? How do they relate to the experimental conditions?
- How do your results and hypothesis align with the paper you read?
Decreased GO Terms
- fructuronate reductase activity:
- precorrin-3B C17-methyltransferase activity:
- precorrin-2 C20-methyltransferase activity:
- coniferyl-aldehyde dehydrogenase activity:
- inositol-1(or 4)-monophosphatase activity:
- trans-2-enoyl-CoA reductase (NADPH) activity:
- aldehyde dehydrogenase [NAD(P)+] activity:
- oxidoreductase activity:
- inositol or phosphatidylinositol phosphatase activity:
- cellular aldehyde metabolic process:
Increased GO Terms
- RNA metabolic process:
- regulation of transcription:
- regulation of nitrogen compound metabolic process:
- regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process:
- regulation of macromolecule biosynthetic process:
- regulation of gene expression:
- regulation of cellular macromolecule biosynthetic process:
- regulation of cellular biosynthetic process:
- regulation of biosynthetic process:
- regulation of macromolecule metabolic process:
Top Ten Regulated Genes
Links
- Chris Rhodes User Page
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- Home Page
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