Chris Rhodes Week 14

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(Decreased GO Terms)
Line 28: Line 28:
#trans-2-enoyl-CoA reductase (NADPH) activity:
#trans-2-enoyl-CoA reductase (NADPH) activity:
#aldehyde dehydrogenase [NAD(P)+] activity:
#aldehyde dehydrogenase [NAD(P)+] activity:
#oxidoreductase activity:
#oxidoreductase activity:The catalysis of redox reactions specifically relating to energy functions such as NAD+/NADH [ AmiGO Link]
#inositol or phosphatidylinositol phosphatase activity:
#inositol or phosphatidylinositol phosphatase activity:
#cellular aldehyde metabolic process:
#cellular aldehyde metabolic process:

Revision as of 18:04, 5 December 2011



Calculations XLS

GenMapp TXT

Increased MAPPFinder Results XLS

Decreased MAPPFinder Results XLS

Increased MAPPFinder Results TXT

Decreased MAPPFinder Results TXT

Materials we need

  • Table of significant genes at p< 0.05,0.01,0.001
  • Top ten significant genes
  • Top ten increased/decreased GO terms
  • Make a list of the functions of the top ten genes.
  • Take all of this data and hypothesize why under the conditions of the experiment they would be up or down regulated.
  • How do your top ten significant genes relate to the GO terms? How do they relate to the experimental conditions?
  • How do your results and hypothesis align with the paper you read?

Decreased GO Terms

  1. fructuronate reductase activity:
  2. precorrin-3B C17-methyltransferase activity:
  3. precorrin-2 C20-methyltransferase activity:
  4. coniferyl-aldehyde dehydrogenase activity:
  5. inositol-1(or 4)-monophosphatase activity:
  6. trans-2-enoyl-CoA reductase (NADPH) activity:
  7. aldehyde dehydrogenase [NAD(P)+] activity:
  8. oxidoreductase activity:The catalysis of redox reactions specifically relating to energy functions such as NAD+/NADH AmiGO Link
  9. inositol or phosphatidylinositol phosphatase activity:
  10. cellular aldehyde metabolic process:

Increased GO Terms

  1. RNA metabolic process:
  2. regulation of transcription:
  3. regulation of nitrogen compound metabolic process:
  4. regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process:
  5. regulation of macromolecule biosynthetic process:
  6. regulation of gene expression:
  7. regulation of cellular macromolecule biosynthetic process:
  8. regulation of cellular biosynthetic process:
  9. regulation of biosynthetic process:
  10. regulation of macromolecule metabolic process:

Top Ten Regulated Genes


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