Chris Rhodes Week 14: Difference between revisions
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*How do your results and hypothesis align with the paper you read? | *How do your results and hypothesis align with the paper you read? | ||
==Decreased GO Terms== | ==Decreased GO Terms== | ||
#fructuronate reductase activity: | #fructuronate reductase activity: Catalysis of the reaction: D-mannonate + NAD(+) = D-fructuronate + H(+) + NADH [http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008866 AmiGO Link] | ||
#precorrin-3B C17-methyltransferase activity: | #precorrin-3B C17-methyltransferase activity: Catalysis of the reaction: S-adenosyl-L-methionine + precorrin-3B = S-adenosyl-L-homocysteine + precorrin [http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0030789&session_id=25amigo1323123055 AmiGO Link] | ||
#precorrin-2 C20-methyltransferase activity: | #precorrin-2 C20-methyltransferase activity:Catalysis of the reaction: S-adenosyl-L-methionine + precorrin-2 = S-adenosyl-L-homocysteine + H(+) + precorrin-3A [http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0030788 AmiGO Link] | ||
#coniferyl-aldehyde dehydrogenase activity: | #coniferyl-aldehyde dehydrogenase activity: Catalysis of the reaction: coniferyl aldehyde + H2O + NAD(P)+ = ferulate + NAD(P)H + H+ [http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0050269 AmiGO Link] | ||
#inositol-1(or 4)-monophosphatase activity: | #inositol-1(or 4)-monophosphatase activity: Catalysis of the reaction: myo-inositol phosphate + H2O = myo-inositol + phosphate [http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0052834&session_id=3934amigo1323123385 AmiGO Link] | ||
#trans-2-enoyl-CoA reductase (NADPH) activity: | #trans-2-enoyl-CoA reductase (NADPH) activity: Catalysis of the reaction: acyl-CoA + NADP+ = trans-2,3-dehydroacyl-CoA + NADPH + H+ [http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0019166 AmiGO Link] | ||
#aldehyde dehydrogenase [NAD(P)+] activity: | #aldehyde dehydrogenase [NAD(P)+] activity: Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+ [http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004030&session_id=7048amigo1323123541 AmiGO Link] | ||
#oxidoreductase activity:The catalysis of redox reactions specifically relating to energy functions such as NAD+/NADH [http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0016491&session_id=6850amigo1323121684 AmiGO Link] | #oxidoreductase activity:The catalysis of redox reactions specifically relating to energy functions such as NAD+/NADH [http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0016491&session_id=6850amigo1323121684 AmiGO Link] | ||
#inositol or phosphatidylinositol phosphatase activity: | #inositol or phosphatidylinositol phosphatase activity: Catalysis of the reaction: inositol phosphate(n) + H2O = inositol phosphate(n-1) + phosphate. This reaction is the removal of a phosphate group from an inositol phosphate [http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0052745&session_id=1133amigo1323123692 AmiGO Link] | ||
#cellular aldehyde metabolic process: | #cellular aldehyde metabolic process: | ||
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#regulation of cellular biosynthetic process: | #regulation of cellular biosynthetic process: | ||
#regulation of biosynthetic process: | #regulation of biosynthetic process: | ||
#regulation of macromolecule metabolic process: | #regulation of macromolecule metabolic process: | ||
==Top Ten Regulated Genes== | ==Top Ten Regulated Genes== |
Revision as of 15:23, 5 December 2011
Files
Increased MAPPFinder Results XLS
Decreased MAPPFinder Results XLS
Increased MAPPFinder Results TXT
Decreased MAPPFinder Results TXT
Materials we need
- Table of significant genes at p< 0.05,0.01,0.001
- Top ten significant genes
- Top ten increased/decreased GO terms
- Make a list of the functions of the top ten genes.
- Take all of this data and hypothesize why under the conditions of the experiment they would be up or down regulated.
- How do your top ten significant genes relate to the GO terms? How do they relate to the experimental conditions?
- How do your results and hypothesis align with the paper you read?
Decreased GO Terms
- fructuronate reductase activity: Catalysis of the reaction: D-mannonate + NAD(+) = D-fructuronate + H(+) + NADH AmiGO Link
- precorrin-3B C17-methyltransferase activity: Catalysis of the reaction: S-adenosyl-L-methionine + precorrin-3B = S-adenosyl-L-homocysteine + precorrin AmiGO Link
- precorrin-2 C20-methyltransferase activity:Catalysis of the reaction: S-adenosyl-L-methionine + precorrin-2 = S-adenosyl-L-homocysteine + H(+) + precorrin-3A AmiGO Link
- coniferyl-aldehyde dehydrogenase activity: Catalysis of the reaction: coniferyl aldehyde + H2O + NAD(P)+ = ferulate + NAD(P)H + H+ AmiGO Link
- inositol-1(or 4)-monophosphatase activity: Catalysis of the reaction: myo-inositol phosphate + H2O = myo-inositol + phosphate AmiGO Link
- trans-2-enoyl-CoA reductase (NADPH) activity: Catalysis of the reaction: acyl-CoA + NADP+ = trans-2,3-dehydroacyl-CoA + NADPH + H+ AmiGO Link
- aldehyde dehydrogenase [NAD(P)+] activity: Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+ AmiGO Link
- oxidoreductase activity:The catalysis of redox reactions specifically relating to energy functions such as NAD+/NADH AmiGO Link
- inositol or phosphatidylinositol phosphatase activity: Catalysis of the reaction: inositol phosphate(n) + H2O = inositol phosphate(n-1) + phosphate. This reaction is the removal of a phosphate group from an inositol phosphate AmiGO Link
- cellular aldehyde metabolic process:
Increased GO Terms
- RNA metabolic process:
- regulation of transcription:
- regulation of nitrogen compound metabolic process:
- regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process:
- regulation of macromolecule biosynthetic process:
- regulation of gene expression:
- regulation of cellular macromolecule biosynthetic process:
- regulation of cellular biosynthetic process:
- regulation of biosynthetic process:
- regulation of macromolecule metabolic process:
Top Ten Regulated Genes
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