Chris Rhodes Week 14

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(Decreased GO Terms)
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#oxidoreductase activity:The catalysis of redox reactions specifically relating to energy functions such as NAD+/NADH [http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0016491&session_id=6850amigo1323121684 AmiGO Link]  
#oxidoreductase activity:The catalysis of redox reactions specifically relating to energy functions such as NAD+/NADH [http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0016491&session_id=6850amigo1323121684 AmiGO Link]  
#inositol or phosphatidylinositol phosphatase activity: Catalysis of the reaction: inositol phosphate(n) + H2O = inositol phosphate(n-1) + phosphate. This reaction is the removal of a phosphate group from an inositol phosphate [http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0052745&session_id=1133amigo1323123692 AmiGO Link]
#inositol or phosphatidylinositol phosphatase activity: Catalysis of the reaction: inositol phosphate(n) + H2O = inositol phosphate(n-1) + phosphate. This reaction is the removal of a phosphate group from an inositol phosphate [http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0052745&session_id=1133amigo1323123692 AmiGO Link]
-
#cellular aldehyde metabolic process:
+
#cellular aldehyde metabolic process: The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells [http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006081 AmiGO Link]
==Increased GO Terms==
==Increased GO Terms==

Revision as of 18:27, 5 December 2011

Contents

Files

Calculations XLS

GenMapp TXT

Increased MAPPFinder Results XLS

Decreased MAPPFinder Results XLS

Increased MAPPFinder Results TXT

Decreased MAPPFinder Results TXT

Materials we need

  • Table of significant genes at p< 0.05,0.01,0.001
  • Top ten significant genes
  • Top ten increased/decreased GO terms
  • Make a list of the functions of the top ten genes.
  • Take all of this data and hypothesize why under the conditions of the experiment they would be up or down regulated.
  • How do your top ten significant genes relate to the GO terms? How do they relate to the experimental conditions?
  • How do your results and hypothesis align with the paper you read?

Decreased GO Terms

  1. fructuronate reductase activity: Catalysis of the reaction: D-mannonate + NAD(+) = D-fructuronate + H(+) + NADH AmiGO Link
  2. precorrin-3B C17-methyltransferase activity: Catalysis of the reaction: S-adenosyl-L-methionine + precorrin-3B = S-adenosyl-L-homocysteine + precorrin AmiGO Link
  3. precorrin-2 C20-methyltransferase activity:Catalysis of the reaction: S-adenosyl-L-methionine + precorrin-2 = S-adenosyl-L-homocysteine + H(+) + precorrin-3A AmiGO Link
  4. coniferyl-aldehyde dehydrogenase activity: Catalysis of the reaction: coniferyl aldehyde + H2O + NAD(P)+ = ferulate + NAD(P)H + H+ AmiGO Link
  5. inositol-1(or 4)-monophosphatase activity: Catalysis of the reaction: myo-inositol phosphate + H2O = myo-inositol + phosphate AmiGO Link
  6. trans-2-enoyl-CoA reductase (NADPH) activity: Catalysis of the reaction: acyl-CoA + NADP+ = trans-2,3-dehydroacyl-CoA + NADPH + H+ AmiGO Link
  7. aldehyde dehydrogenase [NAD(P)+] activity: Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+ AmiGO Link
  8. oxidoreductase activity:The catalysis of redox reactions specifically relating to energy functions such as NAD+/NADH AmiGO Link
  9. inositol or phosphatidylinositol phosphatase activity: Catalysis of the reaction: inositol phosphate(n) + H2O = inositol phosphate(n-1) + phosphate. This reaction is the removal of a phosphate group from an inositol phosphate AmiGO Link
  10. cellular aldehyde metabolic process: The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells AmiGO Link

Increased GO Terms

  1. RNA metabolic process:
  2. regulation of transcription:
  3. regulation of nitrogen compound metabolic process:
  4. regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process:
  5. regulation of macromolecule biosynthetic process:
  6. regulation of gene expression:
  7. regulation of cellular macromolecule biosynthetic process:
  8. regulation of cellular biosynthetic process:
  9. regulation of biosynthetic process:
  10. regulation of macromolecule metabolic process:

Top Ten Regulated Genes

Links

  1. Chris Rhodes User Page
  2. Week 2 Journal
  3. Week 3 Journal
  4. Week 4 Journal
  5. Week 5 Journal
  6. Week 6 Journal
  7. Week 7 Journal
  8. Week 8 Journal
  9. Week 9 Journal
  10. Week 10 Journal
  11. Week 11 Journal
  12. Week 12 Journal
  13. Week 13 Journal
  14. Week 14 Journal
  15. Home Page
  16. Week 5 Assignment Page
  17. Week 6 Assignment Page
  18. Week 7 Assignment Page
  19. Week 8 Assignment Page
  20. Week 9 Assignment Page
  21. Week 10 Assignment Page
  22. Week 11 Assignment Page
  23. Week 12 Assignment Page
  24. Week 13 Assignment Page
  25. Week 14 Assignment Page
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