Chris Rhodes Week 5: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
No edit summary |
No edit summary |
||
Line 8: | Line 8: | ||
'''Rooted Tree''' | '''Rooted Tree''' | ||
[[Image:CHR_Image3_20110928. | [[Image:CHR_Image3_20110928.gif | Subject 3 Rooted Tree]] | ||
==Links== | ==Links== | ||
{{Chris H. Rhodes}} | {{Chris H. Rhodes}} |
Revision as of 14:42, 28 September 2011
Methods
- To create ClustalW alignments and phylogenetic trees for the chosen subjects(3,7,11,12,13, and 14) each subject's sequence datawas uploaded onto Workbench each as a separate session. For Subjects 7 and 14 only selected clones were used. For Subject 7 all the clones from visits 1,3, and 5 were used and for Subject 14 all the clones from visits 5,6,7, and 9.
- For each subject's clones a ClustalW alignment was run using default parameters to generate both the rooted and unrooted phylogenetic trees.
- Subject 3
Links
- Chris Rhodes User Page
- Week 2 Journal
- Week 3 Journal
- Week 4 Journal
- Week 5 Journal
- Week 6 Journal
- Week 7 Journal
- Week 8 Journal
- Week 9 Journal
- Week 10 Journal
- Week 11 Journal
- Week 12 Journal
- Week 13 Journal
- Week 14 Journal
- Home Page
- Week 5 Assignment Page
- Week 6 Assignment Page
- Week 7 Assignment Page
- Week 8 Assignment Page
- Week 9 Assignment Page
- Week 10 Assignment Page
- Week 11 Assignment Page
- Week 12 Assignment Page
- Week 13 Assignment Page
- Week 14 Assignment Page