Chris Rhodes Week 5

Methods

• To create ClustalW alignments and phylogenetic trees for the chosen subjects(3,7,11,12,13, and 14) each subject's sequence datawas uploaded onto Workbench each as a separate session. For Subjects 7 and 14 only selected clones were used. For Subject 7 all the clones from visits 1,3, and 5 were used and for Subject 14 all the clones from visits 5,6,7, and 9.

• For each subject's clones a ClustalW alignment was run using default parameters to generate both the rooted and unrooted phylogenetic trees.
• Subject 3

Unrooted Tree

Rooted Tree

Links

1. Chris Rhodes User Page
2. Week 2 Journal
3. Week 3 Journal
4. Week 4 Journal
5. Week 5 Journal
6. Week 6 Journal
7. Week 7 Journal
8. Week 8 Journal
9. Week 9 Journal
10. Week 10 Journal
11. Week 11 Journal
12. Week 12 Journal
13. Week 13 Journal
14. Week 14 Journal
15. Home Page
16. Week 5 Assignment Page
17. Week 6 Assignment Page
18. Week 7 Assignment Page
19. Week 8 Assignment Page
20. Week 9 Assignment Page
21. Week 10 Assignment Page
22. Week 11 Assignment Page
23. Week 12 Assignment Page
24. Week 13 Assignment Page
25. Week 14 Assignment Page