Computational Tools: Difference between revisions
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== BrickIt == | == BrickIt == | ||
http:// | http://brickit.wiki.sourceforge.net/ | ||
''' | '''Raik Gruenberg and you?''' | ||
BrickIt aims to create a portable web-based registry that helps synthetic biologists to plan, organize and track their local biobrick samples. The database-backed web server can be downloaded as virtual machine to quickly set up a local registry which coordinates the work within a lab, institute or community. Although the data remain local, the web server itself is an open-source project and new functions or improvements can be easily exchanged between the different local registries. BrickIt thus also offers a platform for the shared development of tools and infrastructure that foster the collaboration within the Synthetic Biology community. BrickIt and everything it relies on are open source and free. BrickIt itself is licensed under the GPL. | |||
== GenoCad == | == GenoCad == | ||
Revision as of 15:13, 27 April 2008
Antimony
http://tinyseq.com Jason Morrison, Mackenzie Cowell
TinySeq is the minimal minimal part storage tool. It assigns a unique url to a given sequence, including tracking format & plasmid. TinySeq supports part composition via the url.
Athena
http://tinyseq.com Jason Morrison, Mackenzie Cowell
TinySeq is the minimal minimal part storage tool. It assigns a unique url to a given sequence, including tracking format & plasmid. TinySeq supports part composition via the url.
BioJade
http://web.mit.edu/jagoler/www/biojade/ Jonathan Goler
BioJADE is a design and simulation tool for synthetic biological systems. BioJADE is written in Java, and makes interactive use of BioBrick Repositories. BioJADE enables system designers to specify a system abstractly, tune it, simulate its behavior using a variety of simulators, and finally package the part for use by either the designer or the public.
BrickIt
http://brickit.wiki.sourceforge.net/ Raik Gruenberg and you?
BrickIt aims to create a portable web-based registry that helps synthetic biologists to plan, organize and track their local biobrick samples. The database-backed web server can be downloaded as virtual machine to quickly set up a local registry which coordinates the work within a lab, institute or community. Although the data remain local, the web server itself is an open-source project and new functions or improvements can be easily exchanged between the different local registries. BrickIt thus also offers a platform for the shared development of tools and infrastructure that foster the collaboration within the Synthetic Biology community. BrickIt and everything it relies on are open source and free. BrickIt itself is licensed under the GPL.
GenoCad
http://tinyseq.com Jason Morrison, Mackenzie Cowell
TinySeq is the minimal minimal part storage tool. It assigns a unique url to a given sequence, including tracking format & plasmid. TinySeq supports part composition via the url.
LBS
http://tinyseq.com Jason Morrison, Mackenzie Cowell
TinySeq is the minimal minimal part storage tool. It assigns a unique url to a given sequence, including tracking format & plasmid. TinySeq supports part composition via the url.
TinySeq.com
http://tinyseq.com Jason Morrison, Mackenzie Cowell
TinySeq is the minimal minimal part storage tool. It assigns a unique url to a given sequence, including tracking format & plasmid. TinySeq supports part composition via the url.
