Computing: Difference between revisions

Revision as of 13:26, 1 August 2007

Gnome - free software desktop project - usage tips
PPT to PDF on a Mac
Process Control
Software for papers, posters and talks
VectorNTI
Perl
Python
Ruby
Emacs
CGI - Common Gateway Interface
Cluster
Subversion (SVN) version control system
OpenPBS
Eclipse
Firefox
MySQL
CSS - Cascading Style Sheets
SSH - Secure Shell
Shell programming
DiceWare offers a better way to create a strong, yet easy to remember passphrase for use with encryption and security programs
Code2HTML converts a program source code to syntax highlighted HTML
PHP
Regular Expressions - tutorial and examples in various languages (a.k.a. regexp.info)
ILoveJackDaniel's - web design and development reference
TechCheatSheets.com - technology and programming quick reference
Google Code Search helps you find function definitions and sample code by giving you one place to search publicly accessible source code hosted on the Internet
gotAPI.com - the most comprehensive API collection on the web
- start.gotapi.com - alternative search interface
Software Carpentry - this course is an intensive introduction to basic software development practices for scientists and engineers that can reduce the time they spend programming by 20-25%.
Javascript
Ubuntu
Java
Tripwire

In silico protocols on OWW
Graphing high dimensional data
MATLAB
- MATLAB_Computational_Biology_Tools
R for Statistical Computing
The Really Easy Statistics Site
Modeller
Microfootprinter
Genamics SoftwareSeek links to biotechnology software
LIMS - Laboratory Information Management Systems
bioPIXIE is a novel system for biological data integration and visualization that allows the user to discover interaction networks and pathways in which the user's gene(s)of interest participate
PerlPrimer - open-source PCR primer design (Windows and Linux)
EnzymeX is a program for molecular biologists, developed to help you determine which restriction enzymes you should use to cut your DNA of interest
Papers allows find, download, archive, and organize all your articles within a single application
4Peaks is a program that helps molecular biologists to visualize and edit their DNA sequence files
LabAssistant is a scientific program developed to help you organize your experiments instead of using multiple timers, stickies, and a labjournal that you have to organize all manually
iRNAi is a tool to help scientists quickly design error free oligos

Athena - AFS lockers, Kerberos tickets, user accounts
BioMicro Center - DNA-NET accounts and file storage
BioMicro Cluster
Linux
Xgrid@MIT - join the grid and donate or borrow CPU cycles
OpenMacGrid by MacResearch is a computing grid built up entirely of Macs using Apple's Xgrid technology
ChemDraw Ultra
- BioDraw tools for drawing, sharing, and presenting biological pathways are included with ChemDraw. Common pathway elements (membranes, DNA, enzymes, receptors, reaction arrows, etc.) are built in and other elements may be imported.
Spam screening help page
Spam Screening Personalized Settings
the infrastructure group @ csail - useful MIT computing info though a lot of it is specific CSAIL
MIT Network and Infrastructure Team - network maps, etc

@@ Line 57: / Line 57: @@
 *[[Computing/BioMicro Center|BioMicro Center]] - DNA-NET accounts and file storage
 *[[Computing/BioMicro Cluster|BioMicro Cluster]]
+*[[Computing/Linux|Linux]]
 *[http://deltag5.lns.mit.edu/xgrid/ Xgrid@MIT] - join the grid and donate or borrow CPU cycles
 *[http://www.macresearch.org/openmacgrid OpenMacGrid] by MacResearch is a computing grid built up entirely of Macs using Apple's Xgrid technology