Computing: Difference between revisions

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==General==
==General==
*[[Gnome]] - free software desktop project - usage tips
*[[Computing/Conferencing|Conferencing]] (phone, video, IM/chat)
*[[PPT to PDF on a Mac]]
*[[Process Control]]
*[[Software for papers, posters and talks]]
*[[VectorNTI]]
*[[Perl]]
*[[Computing/Python|Python]]
*[[Ruby]]
*[[Computing/Emacs|Emacs]]
*[[Computing/CGI|CGI]] - Common Gateway Interface
*[[Computing/Cluster|Cluster]]
*[[Computing/Cluster|Cluster]]
*[[Computing/Subversion|Subversion]] (SVN) version control system
*[[OpenPBS]]
*[[Computing/Eclipse|Eclipse]]
*[[Computing/Eclipse|Eclipse]]
*[[Computing/Emacs|Emacs]]
*[[Computing/Encryption|Encryption]]
*[[Computing/Firefox|Firefox]]
*[[Computing/Firefox|Firefox]]
*[[Computing/Java|Java]]
*[[Computing/Linux|Linux]] - various resources
*[[Computing/MySQL|MySQL]]
*[[Computing/MySQL|MySQL]]
*[[Computing/CSS|CSS]] - Cascading Style Sheets
*[[Perl]]
*[[Computing/PHP|PHP]]
*[[PPT to PDF on a Mac]]
*[[Computing/Python|Python]]
*[[Ruby]]
*[[Computing/SSH|SSH]] - Secure Shell
*[[Computing/SSH|SSH]] - Secure Shell
*[[Computing/Shell|Shell programming]]
*[[Computing/SSL|SSL]] - Secure Socket Layer
*[http://www.diceware.com/ DiceWare] offers a better way to create a strong, yet easy to remember passphrase for use with encryption and security programs
*[[Computing/Subversion|Subversion]] (SVN) version control system
*[http://www.palfrader.org/code2html/ Code2HTML] converts a program source code to syntax highlighted HTML
*[[Computing/Virtualization|Virtualization]]
*[[Computing/PHP|PHP]]
*[[Computing/VNC|VNC]]
*[[Computing/VoIP|VoIP]]
*[[Computing/Web|Web programming]]
 
----
*[http://www.regular-expressions.info/ Regular Expressions] - tutorial and examples in various languages (a.k.a. [http://regexp.info/ regexp.info])
*[http://www.regular-expressions.info/ Regular Expressions] - tutorial and examples in various languages (a.k.a. [http://regexp.info/ regexp.info])
*[http://www.ilovejackdaniels.com/ ILoveJackDaniel's] - web design and development reference
*[http://www.ilovejackdaniels.com/ ILoveJackDaniel's] - web design and development reference
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*[http://www.google.com/codesearch/advanced_code_search Google Code Search] helps you find function definitions and sample code by giving you one place to search publicly accessible source code hosted on the Internet
*[http://www.google.com/codesearch/advanced_code_search Google Code Search] helps you find function definitions and sample code by giving you one place to search publicly accessible source code hosted on the Internet
*[http://gotapi.com/ gotAPI.com] - the most comprehensive API collection on the web
*[http://gotapi.com/ gotAPI.com] - the most comprehensive API collection on the web
*[http://www.swc.scipy.org/ Software Carpentry] - this course is an intensive introduction to basic software development practices for scientists and engineers that can reduce the time they spend programming by 20-25%.
**[http://start.gotapi.com/ start.gotapi.com] - alternative search interface
*[[Computing/Javascript|Javascript]]
*[http://www.publicidadedigital.com/ Publicidade Digital] - Technology on Digital Marketing, News and Public Articles reference.
*[http://www.otimizacaodesites.org/ Otimização de Sites] - Technology CSS and PHP SEO programming reference
*[http://www.otimizacaodewebsites.net/ Otimização de Sites] - CSS and PHP for SEO services and programming
*[http://www.marketingdigital.net.br/ Marketing Digital] - Marketing Digital Reference


==Scientific==
==Scientific==
*[http://www.genomecompiler.com/?utm_source=refferal_website&utm_medium=referral&utm_term=computing&utm_content=website&utm_campaign=openwetware Genome Compiler] - a free all-in-one DNA design software
*[[Computing/Robotics|Robotics software (Liquid Handling, etc)]]
*[[Protocols|''In silico'' protocols]] on OWW
*[[Protocols|''In silico'' protocols]] on OWW
*[http://www.elabprotocols.com/search/ Dynamic protocols] - Find, create and share dynamic protocols that adjust to your environment and specifications at eLabProtocols for free
*[[Computational_Tools|Computational Tools]] for synthetic biology on OWW
*[http://www.swc.scipy.org/ Software Carpentry] - this course is an intensive introduction to basic software development practices for scientists and engineers that can reduce the time they spend programming by 20-25%.
*[[Visualization#Graphing data | Graphing high dimensional data]]
*[[Visualization#Graphing data | Graphing high dimensional data]]
*[[Biosoftware_for_Mac|Biosoftware for Mac]]
*[[Software for papers, posters and talks]]
*[[VectorNTI]]
*[[MATLAB]]
*[[MATLAB]]
**[[MATLAB_Computational_Biology_Tools]]
**[[MATLAB_Computational_Biology_Tools]]
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*[http://pixie.princeton.edu/pixie/documents.php bioPIXIE] is a novel system for biological data integration and visualization that allows the user to discover interaction networks and pathways in which the user's gene(s)of interest participate
*[http://pixie.princeton.edu/pixie/documents.php bioPIXIE] is a novel system for biological data integration and visualization that allows the user to discover interaction networks and pathways in which the user's gene(s)of interest participate
*[http://perlprimer.sourceforge.net/ PerlPrimer] - open-source PCR primer design (Windows and Linux)
*[http://perlprimer.sourceforge.net/ PerlPrimer] - open-source PCR primer design (Windows and Linux)
*[http://www.bioperl.org/ BioPerl] project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research
*[http://biojava.org/ BioJava] is an open-source project dedicated to providing a Java framework for processing biological data
*[http://biopython.org/ BioPython] is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics
*[http://mekentosj.com/enzymex/ EnzymeX] is a program for molecular biologists, developed to help you determine which restriction enzymes you should use to cut your DNA of interest
*[http://mekentosj.com/enzymex/ EnzymeX] is a program for molecular biologists, developed to help you determine which restriction enzymes you should use to cut your DNA of interest
*[http://mekentosj.com/papers/ Papers] allows find, download, archive, and organize all your articles within a single application
*[http://mekentosj.com/papers/ Papers] allows find, download, archive, and organize all your articles within a single application
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*[http://mekentosj.com/labassistant/ LabAssistant] is a scientific program developed to help you organize your experiments instead of using multiple timers, stickies, and a labjournal that you have to organize all manually
*[http://mekentosj.com/labassistant/ LabAssistant] is a scientific program developed to help you organize your experiments instead of using multiple timers, stickies, and a labjournal that you have to organize all manually
*[http://mekentosj.com/irnai/ iRNAi] is a tool to help scientists quickly design error free oligos
*[http://mekentosj.com/irnai/ iRNAi] is a tool to help scientists quickly design error free oligos
*[http://research.med.helsinki.fi/plasmadna/ PlasmaDNA] is a freeware program designed to analyse and manipulate DNA sequences to simulate restriction enzyme digestions, ligations and PCR.  Identical versions are available for PC and Mac operating systems.
*The [http://tranche.proteomecommons.org/ Tranche Project] is a free and open source file sharing tool that enables collections of computers to easily share and cite scientific data sets.
==Software development==
*[http://cyberunits.sourceforge.net CyberUnits], a library of reusable Pascal units for high-performance computer simulations in life sciences.
*[http://wiki.lazarus.freepascal.org/Portal:SciTech Lazarus/FPC SciTech Portal], Lazarus and Free Pascal for Science, medicine and technology.
*[http://puma-repository.sourceforge.net/ PUMA Repository], Pascal Units for Medical Applications


==MIT==
==MIT==
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*[http://libraries.mit.edu/guides/cheatsheets/chemdraw/index.html ChemDraw Ultra]
*[http://libraries.mit.edu/guides/cheatsheets/chemdraw/index.html ChemDraw Ultra]
**BioDraw tools for drawing, sharing, and presenting biological pathways are included with ChemDraw. Common pathway elements (membranes, DNA, enzymes, receptors, reaction arrows, etc.) are built in and other elements may be imported.
**BioDraw tools for drawing, sharing, and presenting biological pathways are included with ChemDraw. Common pathway elements (membranes, DNA, enzymes, receptors, reaction arrows, etc.) are built in and other elements may be imported.
*[http://web.mit.edu/ist/topics/email/query.html Find Out the Name of Your Post Office Server]
*[http://web.mit.edu/is/help/nospam Spam screening help page]
*[https://nic.mit.edu/cgi-bin/spamscreen Spam Screening Personalized Settings]
*[http://tig.csail.mit.edu/ the infrastructure group @ csail] - useful MIT computing info though a lot of it is specific CSAIL
*[http://web.mit.edu/network/ MIT Network and Infrastructure Team] - network maps, etc
*[http://web.mit.edu/itpartners/ MIT IT Partners]
==General Non Scientific Programming==
*[http://www.planodeestudante.com.br/ Plano de Estudante]
*[http://www.vazamento.net.br/ Vazamento]
*[http://www.otimizacaodesites.org/blog/ Blog]
*[http://www.telas-de-protecao.com/ Telas de Proteção]
*[http://www.apartamentonapraia.net.br/ Apartamento na Praia]
*[http://www.artigos.net.br/ Artigos]
*[http://www.monografia.net.br/ Monografia]
*[http://www.sorveteria.net/ Sorveteria]
*[http://www.plano-de-saude.com/ Plano de Saúde]
*[http://www.convenio-medico.com/ Convênio Médico]
*[http://www.ddleak.com.br/ Desentupidora]
*[http://www.casas.net.br/ Casas]
*[http://www.apartamentos.net.br/ Apartamentos]
*[http://www.papeldeparedeparadecoracao.com/ Papel de Parede]
*[http://www.lingeriefashion.com.br/ Lingerie]
*[http://www.brindes-personalizados.net/ Brindes Personalizados]
*[http://www.alluringstone.com/ Granitte]
*[http://www.brechomarialouca.com.br/ Brechó]
*[http://www.casasnapraia.net.br/ Casas na Praia]
*[http://www.concertinas.biz/ Concertinas]
*[http://www.concertinas.net.br/ Concertinas]
*[http://www.empresasavenda.org/ Empresas a Venda]
*[http://www.estilodevida.net.br/ Estilo de Vida]
*[http://www.floricultura.biz/ Floricultura]
*[http://www.seo-brasil.net/ SEO]
*[http://www.voiptec.com.br? Voip]
*[http://www.portao.net.br/ Portão]

Latest revision as of 05:17, 9 December 2015

General

Scientific

Software development

MIT

General Non Scientific Programming

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