Cumbers:Software

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
Line 8: Line 8:
2.http://openwetware.org/wiki/Image:Function_takes_plate%2C_well%2C_returns_growth_stats.3.1.0.R
2.http://openwetware.org/wiki/Image:Function_takes_plate%2C_well%2C_returns_growth_stats.3.1.0.R
3.http://openwetware.org/images/0/0f/List_wells_from_well_phrase_and_validate_functions.2.2.1.R
3.http://openwetware.org/images/0/0f/List_wells_from_well_phrase_and_validate_functions.2.2.1.R
 +
 +
 +
These scripts have been written for a particular function of automatically reading growth curves from 96 well plates, so please feel free to email me if you have any questions about usage, if any of the notation is not clear or if you would like to adapt this code for another use.

Revision as of 18:49, 9 August 2011

Here are some R scripts that I wrote for processing growth curve data from 96 well plates using XML files from a Molecular Devices Plate Reader. There are 7 functions in 3 different files and the diagram below outlines what each function does.


You can download the files here and run them in R: 1.http://openwetware.org/images/e/e6/Script_to_produce_growth_data_from_single_wells_with_stats_for_a_single_plate_9.0.1.R 2.http://openwetware.org/wiki/Image:Function_takes_plate%2C_well%2C_returns_growth_stats.3.1.0.R 3.http://openwetware.org/images/0/0f/List_wells_from_well_phrase_and_validate_functions.2.2.1.R


These scripts have been written for a particular function of automatically reading growth curves from 96 well plates, so please feel free to email me if you have any questions about usage, if any of the notation is not clear or if you would like to adapt this code for another use.

Personal tools