DNA extraction - Salting Out: Difference between revisions
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#Invert to mix and incubate at -20°C for ~15 minutes | #Invert to mix and incubate at -20°C for ~15 minutes | ||
#Centrifuge (preferably at 4°C) at maximum speed in a benchtop centrifuge for 20 minutes | #Centrifuge (preferably at 4°C) at maximum speed in a benchtop centrifuge for 20 minutes | ||
#Wash pellet with | #Wash pellet with 98% ethanol, and once or twice with 70%. Allow to air dry then resuspend in water or 1xTE | ||
==Critical steps== | ==Critical steps== |
Revision as of 21:13, 20 July 2008
Curators
- Marcus McHale Email me through OpenWetWare
- This protocol has evolved with me and I am sure many others, please share your optimisations.
Anyone should feel free to add themselves as a curator for this consensus protocol. You do not need to be a curator in order to contribute. The OpenWetWare community is currently discussing the idea of protocol curators. Please contribute.
Abstract
- Simple procedure to isolate DNA from diverse tissues
Materials
- Pipettes and tips
- 1.5ml microcentrifuge tubes
Reagents
- Digestion Buffer (pH 8.0): 10mM NaCl, 10mM TRIS (pH 8.0), 10mM EDTA (pH 8.0), 0.5% SDS,
- Proteinase K 20mg/mL
- Sodium acetate 3M (pH 5.2)
- Ethanol 70% and 98% (chill prior to use)
Equipment
- Incubator/Water Bath: preferably shaking
- Centrifuge: preferably refrigerated
- Vortex
Procedure
- Tissue Digestion
- Add 5μL Proteinase K to each mL of Digestion Buffer (final 0.5mg/mL)
- Homogenise (or simply place) tissue in solution
- Incubate at 55°C for 1 hour to overnight
- Mix by vortexing then centrifuge at maximum speed in a benchtop centrifuge for 2 minutes
- Transfer supernatant into a new tube
- Precipitation of Protein and Cell Debris
- Add 1/10 volume of Sodium Acetate 3M pH 5.2 (final 0.3M)
- Invert to mix and incubate at -20°C for ~15 minutes
- Centrifuge (preferably at 4°C) at maximum speed in a benchtop centrifuge for 20 minutes
- Transfer supernatant to a new tube
- Precipitation of Nucleic Acids
- Add ~2 volumes of 98% ethanol (final 60-80%)
- Invert to mix and incubate at -20°C for ~15 minutes
- Centrifuge (preferably at 4°C) at maximum speed in a benchtop centrifuge for 20 minutes
- Wash pellet with 98% ethanol, and once or twice with 70%. Allow to air dry then resuspend in water or 1xTE
Critical steps
- After adding sodium acetate and centrifuging be careful not to transfer any of the white solid (cell debris and SDS) into the fresh tube
- Ensure to dry the pelletted DNA completely before attempting to resuspend
Troubleshooting
You may wish to kill the Proteinase K (95°C, 10 minutes)
Notes
- Other Salts (NaCl, AmOAc, LiCl) may also be used. See here for an explanation of how ethanol precipitation works and a description of the roles of different salts [1]
- I routinely rely on the denaturation step of Hot-start Taq in my PCR to take care killing proteinase K
- I have successfully used this protocol on fish, mammal and insect tissue.
- Works well for high throughput (e.g. 96 well plate extractions). To remove ethanol following precipitation/wash steps simply invert the plate over a sink then spin gently (~100 rcf) inverted over absorbant paper towelling.
Acknowledgments
- Damien Broderick from Queensland Department of Primary Industries and Fisheries (Australia) first taught me this method.
References
- Miller SA, Dykes DD, Polesky HF (1988) A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Research, 16, 1215–1215.
- Murray MG and Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Research, 8(19), 4321-4326.
See Also
- Oneill Lab:DNA Extraction
- DNA Precipitation
- DNA extraction from tissue
- Mouse tissue lysis for genotyping
Discussion
You can discuss this protocol.