Dahlquist:Courses: Difference between revisions

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This information can also be found at the Dahlquist Lab [http://myweb.lmu.edu/kdahlqui/Courses.htm Courses] page at Loyola Marymount University.
This information can also be found at the Dahlquist Lab [http://myweb.lmu.edu/kdahlqui/Courses.htm Courses] page at Loyola Marymount University.


== Fall 2010 Courses ==
== Fall 2016 Courses ==


=== Biology 201: Cell Function ===
=== Biology 368: Bioinformatics Laboratory ===


Section BIOL 201-01 MWF 9:00-9:50 AM, Pereira 140
Tuesdays 1:10-5:00 PM, Seaver 120


Section BIOL 201-02 MWF 12:00-12:50 PM, Pereira 200
[[BIOL368/F16 | BIOL368/F16 site on this wiki]]
 
== Spring 2016 Courses ==
 
=== Biology 478:  Molecular Biology of the Genome ===
 
Mondays and Wednesdays 1:10-5:00 PM, Life Sciences Building 330 and 201
 
Currents Students: For syllabus and course information login to [https://mylmuconnect.blackboard.com/webapps/login/ MyLMU Connect], formerly known as Blackboard (or via [https://my.lmu.edu/portal/page/portal/mylmu/welcome MYLMU])
 
=== Biology 585:  Issues in Biotechnology ===
 
Thursdays 4:20-6:20 PM Life Sciences Building 118
 
Currents Students: For syllabus and course information login to [https://mylmuconnect.blackboard.com/webapps/login/ MyLMU Connect], formerly known as Blackboard (or via [https://my.lmu.edu/portal/page/portal/mylmu/welcome MYLMU])
 
== Fall 2015 Courses ==
 
=== Biology 201:  Cell Function ===
 
Section BIOL 201-03:  MWF 11:30 AM - 12:20 PM, Doolan 222
 
Section BIOL 201-04:  MWF 12:40-1:30 PM, Doolan 222


Description: The purpose of this course is to introduce students to the core concepts of cellular biology that needed to succeed in upper-division biology courses. The overall theme for this course is how structure implies function for macromolecules and cells. Course topics include: cellular and sub-cellular structures and functions, DNA and RNA structure and function, protein synthesis and structure, enzyme function, metabolic pathways, and membrane function.
Description: The purpose of this course is to introduce students to the core concepts of cellular biology that needed to succeed in upper-division biology courses. The overall theme for this course is how structure implies function for macromolecules and cells. Course topics include: cellular and sub-cellular structures and functions, DNA and RNA structure and function, protein synthesis and structure, enzyme function, metabolic pathways, and membrane function.


Currents Students: For syllabus and course information login to [https://mylmuconnect.lmu.edu/webapps/login/ MyLMU Connect], formerly known as Blackboard (or via [https://my.lmu.edu/portal/page/portal/mylmu/welcome MYLMU])
Currents Students: For syllabus and course information login to [https://mylmuconnect.blackboard.com/webapps/login/ MyLMU Connect], formerly known as Blackboard (or via [https://my.lmu.edu/portal/page/portal/mylmu/welcome MYLMU])
 
=== Biology/Computer Science 367:  Biological Databases ===
 
TR 2:40-3:55 PM Seaver 120
 
[https://xmlpipedb.cs.lmu.edu/biodb/fall2015/index.php/Main_Page Course web site and public wiki]
 
== Spring 2015 Courses ==
 
=== Biology 398-04:  Biomathematical Modeling/Mathematics 388-01:  Survey of Biomathematics ===
 
TR 9:25 - 10:40 AM, Seaver 120
 
[[BIOL398-04/S15 | BIOL398-04/S15 site on this wiki]]
 
=== Biology 478:  Molecular Biology of the Genome ===
 
Mondays and Wednesdays 1:00-4:50 PM, Seaver 205 and 215
 
== Fall 2014 Courses ==
=== Biology 201:  Cell Function ===
 
Section BIOL 201-02:  MWF 10:00-10:50 AM, Doolan 222
 
Section BIOL 201-03:  MWF 11:00-11:50 PM, Doolan 222
 
Currents Students: For syllabus and course information login to [https://mylmuconnect.blackboard.com/webapps/login/ MyLMU Connect], formerly known as Blackboard (or via [https://my.lmu.edu/portal/page/portal/mylmu/welcome MYLMU])
 
=== Biology 368:  Bioinformatics Laboratory ===
 
Section BIOL 368-01:  W 1:00-4:50 PM, Seaver 120
 
[[BIOL368/F14 | BIOL368/F14 site on this wiki]]
 
== Fall 2013 Courses ==
=== Biology 201:  Cell Function ===
 
Section BIOL 201-03:  MWF 11:00-11:50 AM, Doolan 222
 
Section BIOL 201-04:  MWF 12:00-12:50 PM, Doolan 222


Protein Structure Exploration exercises are hosted [[BIOL201/F10 | here on this wiki]].
Currents Students: For syllabus and course information login to [https://mylmuconnect.blackboard.com/webapps/login/ MyLMU Connect], formerly known as Blackboard (or via [https://my.lmu.edu/portal/page/portal/mylmu/welcome MYLMU])


=== Biology / Computer Science / Honors 398: Biological Databases ===
=== Biology/Computer Science 367/Honors 398: Biological Databases ===


T 4:30-7:00 PM, Doolan 219  
TR 9:25-10:40 AM:  Doolan 219


Description: The disciplines of biology and computer science come together in bioinformatics, where computational tools are needed to manage and analyze the flood of data coming from new genomics technologies. Biological databases form a significant part of this young and exciting field. This course introduces students to both the biology and computer science expertise needed to understand, use, and develop biological databases. Biology topics include the fundamentals of genetics, molecular biology, and biochemistry needed to understand the data stored in biological databases, as well as the biotechnologies used to gather these data in a high-throughput fashion. Computer science topics include what biological databases are, why they are important (and needed), and the challenges that arise in compiling them effectively. Biology and computer science lectures on topics that are relevant to biological databases are coupled with hands-on experience with a variety of software packages ranging from bioinformatics utilities to general-purpose database and software development tools. After learning how to use a biological database, students will be asked to build one of their own.
[https://xmlpipedb.cs.lmu.edu/biodb/fall2013/index.php/Main_Page Course web site and public wiki]


Currents Students: For syllabus and course information, login to the course wiki (coming soon).
== Spring 2013 Courses ==


=== Biology 398-03:  Biomathematical Modeling/Mathematics 388-01:  Survey of Biomathematics ===


== Spring 2010 Courses ==
TR 9:25 - 10:40 AM, Seaver 120


=== Biology 398-01: Bioinformatics Laboratory ===
[[BIOL398-03/S13 | BIOL398-03/S13 site on this wiki]]


T 8:00 AM - 12:00 PM, Seaver 120
=== Biology 478: Molecular Biology of the Genome ===


See [[BIOL398-01/S10 | course web site on this wiki]].
== Fall 2011 Courses ==


=== Biology 478: Molecular Biology of the Genome ===
=== Biology 201: Cell Function ===


MW 1:00-4:50 PM, Seaver 207 and 215
Section BIOL 201-01:  MWF 9:00-9:50 AM, Pereira 140


Description: The completion of the Human Genome Project 50 years after Watson and Crick first described the structure of DNA marks a fundamental shift in the way we view ourselves and practice biology. This course will examine the fundamental concepts in molecular biology required to understand the biotechnology that has brought us to the genomics era and beyond. In the laboratory, students will become proficient in the basic techniques of molecular biology and then will get to work with cutting-edge genomics technology. Students will design and carry out a DNA microarray experiment. Students will then use bioinformatics tools to analyze their DNA microarray data and to model biological pathways and networks. By the end of this course, students will be working independently on a research project.
Section BIOL 201-03:  MWF 10:00-10:50 PM, Pereira 207


Currents Students: For syllabus and course information login to [https://mylmuconnect.lmu.edu/webapps/login/ MyLMU Connect], formerly known as Blackboard (or via [https://my.lmu.edu/portal/page/portal/mylmu/welcome MYLMU])
Currents Students: For syllabus and course information login to [https://mylmuconnect.lmu.edu/webapps/login/ MyLMU Connect], formerly known as Blackboard (or via [https://my.lmu.edu/portal/page/portal/mylmu/welcome MYLMU])
=== Biology 368:  Bioinformatics Laboratory ===
Section BIOL 368-01:  W 1:00-4:50 PM, Seaver 120
[[BIOL368/F11 | BIOL368/F11 site on this wiki]]


== Previous Courses ==
== Previous Courses ==


* '''Spring 2011 Courses'''
** Biology 398-01:  Biomathematical Modeling/Mathematics 388-01:  Survey of Biomathematics
*** [[BIOL398-01/S11 | BIOL398-01/S11 site on this wiki]]
* '''Fall 2010 Courses'''
** Biology 201-01, -02: Cell Function
*** Protein Structure Exploration exercises are hosted [[BIOL201/F10 | here on this wiki]].  NOTE:  these are currently under construction.
** Biology / Computer Science 367-01/ Honors 398-05: Biological Databases
*** [https://www.cs.lmu.edu/biodb/fall2010 Course wiki on the CS network]
*** [[BIOL367/F10 | BIOL367/F10 site on this wiki]]
* '''Spring 2010 Courses'''
** Biology 398-01: Bioinformatics Laboratory
*** See [[BIOL398-01/S10 | BIOL398-01/S10 site on this wiki]].
** Biology 478: Molecular Biology of the Genome
* '''Fall 2009 Courses'''
* '''Fall 2009 Courses'''
** Biology 201-01, -02: Cell Function
** Biology 201-01, -02: Cell Function

Revision as of 11:54, 23 August 2016

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This information can also be found at the Dahlquist Lab Courses page at Loyola Marymount University.

Fall 2016 Courses

Biology 368: Bioinformatics Laboratory

Tuesdays 1:10-5:00 PM, Seaver 120

BIOL368/F16 site on this wiki

Spring 2016 Courses

Biology 478: Molecular Biology of the Genome

Mondays and Wednesdays 1:10-5:00 PM, Life Sciences Building 330 and 201

Currents Students: For syllabus and course information login to MyLMU Connect, formerly known as Blackboard (or via MYLMU)

Biology 585: Issues in Biotechnology

Thursdays 4:20-6:20 PM Life Sciences Building 118

Currents Students: For syllabus and course information login to MyLMU Connect, formerly known as Blackboard (or via MYLMU)

Fall 2015 Courses

Biology 201: Cell Function

Section BIOL 201-03: MWF 11:30 AM - 12:20 PM, Doolan 222

Section BIOL 201-04: MWF 12:40-1:30 PM, Doolan 222

Description: The purpose of this course is to introduce students to the core concepts of cellular biology that needed to succeed in upper-division biology courses. The overall theme for this course is how structure implies function for macromolecules and cells. Course topics include: cellular and sub-cellular structures and functions, DNA and RNA structure and function, protein synthesis and structure, enzyme function, metabolic pathways, and membrane function.

Currents Students: For syllabus and course information login to MyLMU Connect, formerly known as Blackboard (or via MYLMU)

Biology/Computer Science 367: Biological Databases

TR 2:40-3:55 PM Seaver 120

Course web site and public wiki

Spring 2015 Courses

Biology 398-04: Biomathematical Modeling/Mathematics 388-01: Survey of Biomathematics

TR 9:25 - 10:40 AM, Seaver 120

BIOL398-04/S15 site on this wiki

Biology 478: Molecular Biology of the Genome

Mondays and Wednesdays 1:00-4:50 PM, Seaver 205 and 215

Fall 2014 Courses

Biology 201: Cell Function

Section BIOL 201-02: MWF 10:00-10:50 AM, Doolan 222

Section BIOL 201-03: MWF 11:00-11:50 PM, Doolan 222

Currents Students: For syllabus and course information login to MyLMU Connect, formerly known as Blackboard (or via MYLMU)

Biology 368: Bioinformatics Laboratory

Section BIOL 368-01: W 1:00-4:50 PM, Seaver 120

BIOL368/F14 site on this wiki

Fall 2013 Courses

Biology 201: Cell Function

Section BIOL 201-03: MWF 11:00-11:50 AM, Doolan 222

Section BIOL 201-04: MWF 12:00-12:50 PM, Doolan 222

Currents Students: For syllabus and course information login to MyLMU Connect, formerly known as Blackboard (or via MYLMU)

Biology/Computer Science 367/Honors 398: Biological Databases

TR 9:25-10:40 AM: Doolan 219

Course web site and public wiki

Spring 2013 Courses

Biology 398-03: Biomathematical Modeling/Mathematics 388-01: Survey of Biomathematics

TR 9:25 - 10:40 AM, Seaver 120

BIOL398-03/S13 site on this wiki

Biology 478: Molecular Biology of the Genome

Fall 2011 Courses

Biology 201: Cell Function

Section BIOL 201-01: MWF 9:00-9:50 AM, Pereira 140

Section BIOL 201-03: MWF 10:00-10:50 PM, Pereira 207

Currents Students: For syllabus and course information login to MyLMU Connect, formerly known as Blackboard (or via MYLMU)

Biology 368: Bioinformatics Laboratory

Section BIOL 368-01: W 1:00-4:50 PM, Seaver 120

BIOL368/F11 site on this wiki

Previous Courses

  • Spring 2011 Courses
  • Fall 2010 Courses
  • Spring 2010 Courses
  • Fall 2009 Courses
    • Biology 201-01, -02: Cell Function
    • Biology / Computer Science / Honors 398-01: Biological Databases
  • Spring 2009 Courses
    • Biology 478: Molecular Biology of the Genome
    • Honors 240-01: On the Nature of Things
  • Fall 2008 Courses
    • Biology 201-01: Cell Function
    • Biology / Computer Science / Honors 398-01: Biological Databases
    • Biology 398-01: Bioinformatics Laboratory

Problem Space: Analysis of Prostate Cancer DNA Microarray Data

  • GenMAPP Prostate Cancer Exercise Part 1
  • GenMAPP Prostate Cancer Exercise Part 2 (MAPPFinder)
    • This part of the exercise can be completed independently of Part 1 by downloading the GenMAPP Expression Dataset <Hs_ED_ProstateCancer_20060130.gex> from GenMAPP.org using the Data Acquisition Tool from within the GenMAPP program.
    1. Launch GenMAPP.
    2. Select the menu item, Data > Download Data from GenMAPP.org
    3. Expand the "Expression Datasets" folder, and click on "Homo sapiens" to see the file.
    4. Check the box next to the filename.
    5. Click the Start button to download.
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