Dahlquist:SURP 2015 Schedule: Difference between revisions

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(→‎SURP 2015 Schedule: link to Brandon's journal club pptx)
(→‎SURP 2015 Schedule: link to final presentation for President Snyder)
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* Joint group meeting, 12:00-2:00 PM, S202
* Joint group meeting, 12:00-2:00 PM, S202
** Everyone gives final research presentations
** [[DahlquistLab_SURP_20150624.pptx| Group presentation for President Snyder]]
** Individual presentations
* SURP Abstracts due to [mailto:Undergraduate.Research@lmu.edu Undergraduate.Research@lmu.edu]
* SURP Abstracts due to [mailto:Undergraduate.Research@lmu.edu Undergraduate.Research@lmu.edu]
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Revision as of 16:26, 24 June 2015

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SURP 2015 Schedule

Week Date Wet Lab GRNsight GRNmap Meetings & Events
1 Mon

May 18

Work with GRNmap team Work with GRNmap team AM: How to wiki, PowerPoint overview

PM: Within- and between-array normalization, one-strain ANOVA

Tues

May 19

Work with GRNmap team Work with GRNmap team AM: Modified T test

PM: Between-strain ANOVA, clustering with stem, preparation of GenMAPP input sheet, "Deception at Duke" video, "Baggerly: Forensic Bioinformatics" video, research ethics discussion

  • SURP BBQ, 12:00-1:00 PM, Bird's Nest
Wed

May 20

Work with GRNmap team
  • Decide which strain to label and hybridize to microarrays: Δino2, Δopi1, or Δyap1
  • Decide which strains to test for growth impairment in cold: Δarg80 (voted no), Δrsf2, Δrtg3, Δtbf1 (essential, null not available), Δyhp1, Δyox1, Δphd1, Δnrg1 or other
 Work with GRNmap team GenMAPP, YEASTRACT
2 Tues

May 26

Work with GRNmap team Work with GRNmap team; GRNsight code walk-through All: Create input sheet and run GRNmap

TM/TR: work on issue #74

Wed

May 27

MH/KW: Δyap1 F1 cDNA synthesis, Δyap1 F1 cDNA purification, aRNA synthesis

KM: genotyping PCR Δnrg1

Thurs

May 28

MH/KW: repeat Δyap1 F1 cDNA synthesis, Δyap1 F1 cDNA purification

KM: Δnrg1 PCR gel, Δphd1 genotyping PCR

GJ/NW: work on issue #10
3 Mon

June 1

MH/KW: Δyap1 F1 aRNA synthesis, purification, A260

KM: Δnrg1, Δphd1 temp-sensitive growth expt on plates

Tues

June 2

MH/KW: Δyap1 F1 aRNA gel, dry samples

KM: repeat Δphd1 PCR w/wt template; PCR Δrsf2

Wed

June 3

4 Mon

June 8

KM: Δrsf2, Δrtg3 temp-sensitive growth expt on plates
Tues

June 9

Wed

June 10

  • GRNsight meeting 11:00-12:00 PM, S202
  • Joint group meeting, 12:00-2:00 PM, S202
  • GRNmap meeting 2:00-4:00 PM, S202
5 Mon

June 15

KM: Δyhp1, Δyox1 temp-sensitive growth expt on plates (KD at BioQUEST workshop)
Tues

June 16

(KD at BioQUEST workshop)
Wed

June 17

6 Mon

June 22

Tues

June 23

Wed

June 24

Lab check-out

Lab check-out

Lab check-out

Strain Voting

Δyap1

Δino2

Δopi1

Δrtg3

Δrsf2

Δtbf1

Δyox1

Δyhp1

Δphd1

Δnrg1

Δarg80

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