Dahlquist:SURP 2015 Schedule
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SURP 2015 Schedule
Week | Date | Wet Lab | GRNsight | GRNmap | Meetings & Events |
1 | Mon
May 18 |
AM: How to wiki, PowerPoint overview
PM: Within- and between-array normalization, one-strain ANOVA |
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Tues
May 19 |
AM: Modified T test
PM: Between-strain ANOVA, clustering with stem, preparation of GenMAPP input sheet, "Deception at Duke" video, "Baggerly: Forensic Bioinformatics" video, research ethics discussion |
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Wed
May 20 |
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2 | Tues
May 26 |
AM: F1 cDNA synthesis
PM: F1 cDNA purification, aRNA synthesis |
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Wed
May 27 |
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Thurs
May 28 |
AM: F1 aRNA purification, quantification
PM: F1 aRNA gel |
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3 | Mon
June 1 |
AM: dry F1 aRNA, F1 cDNA synthesis
PM: F1 label & hybe |
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Tues
June 2 |
AM: F1 wash & scan
PM: F2 cDNA purification, aRNA synthesis |
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Wed
June 3 |
AM: F2 aRNA purification, quantification
PM: F2 aRNA gel |
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4 | Mon
June 8 |
AM: dry F2 aRNA, F3 cDNA synthesis
PM: F2 label & hybe |
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Tues
June 9 |
AM: F2 wash & scan
PM: F3 cDNa purification, aRNA synthesis |
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Wed
June 10 |
AM: F3 aRNA purification, quantification
PM: F3 aRNA gel |
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5 | Mon
June 15 |
AM: dry F3 aRNA, F4 cDNA synthesis
PM: F3 label & hybe |
(KD at BioQUEST workshop) | ||
Tues
June 16 |
AM: F3 wash & scan
PM: F4 cDNA purification, aRNA synthesis |
(KD at BioQUEST workshop) | |||
Wed
June 17 |
AM: F4 aRNA purification, quantification
PM: F4 aRNA gel |
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6 | Mon
June 22 |
AM:
PM: F4 label & hybe |
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Tues
June 23 |
AM: F4 wash & scan | ||||
Wed
June 24 |
Lab check-out |
Lab check-out |
Lab check-out |
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Strain Voting
Δino2
- Within-strain
- 2, Katherine Grace Johnson 14:36, 20 May 2015 (EDT)
- 1, Kevin Wyllie 14:39, 20 May 2015 (EDT)
- 1, Natalie Williams 14:41, 20 May 2015 (EDT)
- Between-strain
- 0, Katherine Grace Johnson 14:36, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:39, 20 May 2015 (EDT)
- 0, Natalie Williams 14:41, 20 May 2015 (EDT)
- 0, Anindita Varshneya 14:47, 20 May 2015 (EDT)
Δopi1
- Within-Strain
- 1 Katherine Grace Johnson 14:39, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:40, 20 May 2015 (EDT)
- 0, Natalie Williams 14:42, 20 May 2015 (EDT)
- 0, Tessa A. Morris 14:47, 20 May 2015 (EDT)
- Between-Strain
- 0 Katherine Grace Johnson 14:39, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:40, 20 May 2015 (EDT)
- 0, Natalie Williams 14:42, 20 May 2015 (EDT)
- 0, Tessa A. Morris 14:47, 20 May 2015 (EDT)
Δyap1
- Within-strain
- 1, Katherine Grace Johnson 14:40, 20 May 2015 (EDT)
- 2, Natalie Williams 14:44, 20 May 2015 (EDT)
- 0, Tessa A. Morris 14:47, 20 May 2015 (EDT)
- Between-strain
- 0, Katherine Grace Johnson 14:40, 20 May 2015 (EDT)
- 2, Natalie Williams 14:44, 20 May 2015 (EDT)
- 2, Tessa A. Morris 14:47, 20 May 2015 (EDT)
Δarg80
- Within-strain
- 0 Katherine Grace Johnson 14:41, 20 May 2015 (EDT)
- 0, Tessa A. Morris 14:46, 20 May 2015 (EDT)
- Between-strain
- 0 Katherine Grace Johnson 14:41, 20 May 2015 (EDT)
- 0, Tessa A. Morris 14:46, 20 May 2015 (EDT)
Δrsf2
- Within-Strain ANOVA
- 2, Katherine Grace Johnson 14:44, 20 May 2015 (EDT)
- 0, Tessa A. Morris 14:45, 20 May 2015 (EDT)
- Between-strain ANOVA
- 2, Kam D. Dahlquist 14:41, 20 May 2015 (EDT) (wt v. dZAP1)
- 3, Katherine Grace Johnson 14:44, 20 May 2015 (EDT)
- 0, Tessa A. Morris 14:45, 20 May 2015 (EDT)
Δrtg3
- Within-strain
- 0, Tessa A. Morris 14:45, 20 May 2015 (EDT)
- 0, Katherine Grace Johnson 14:45, 20 May 2015 (EDT)
- Between-strain ANOVA
- 2, Kam D. Dahlquist 14:42, 20 May 2015 (EDT) (wt v. dZAP1)
- 2, Tessa A. Morris 14:45, 20 May 2015 (EDT)
- 2, Katherine Grace Johnson 14:45, 20 May 2015 (EDT)
Δtbf1
- Within-strain
- 0, Tessa A. Morris 14:44, 20 May 2015 (EDT)
- 0, Katherine Grace Johnson 14:46, 20 May 2015 (EDT)
- Between-strain
- 2, Kam D. Dahlquist 14:43, 20 May 2015 (EDT), (wt vs. dZAP1)
- 0, Tessa A. Morris 14:44, 20 May 2015 (EDT)
- 0, Katherine Grace Johnson 14:46, 20 May 2015 (EDT)
Δyhp1
- Within-strain
- 0, Tessa A. Morris 14:42, 20 May 2015 (EDT)
- Between-strain
- 0, Tessa A. Morris 14:42, 20 May 2015 (EDT)
Δyox1
- Within-strain
- 1, Tessa A. Morris 14:41, 20 May 2015 (EDT)
- Between-strain
- 0, Tessa A. Morris 14:41, 20 May 2015 (EDT)
Δphd1
- Within-strain
- 0, Tessa A. Morris 14:41, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:42, 20 May 2015 (EDT)
- Between-strain
- 0, Tessa A. Morris 14:41, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:42, 20 May 2015 (EDT)
Δnrg1
- Within-strain
- 2, Tessa A. Morris 14:40, 20 May 2015 (EDT)
- 1, Kevin Wyllie 14:41, 20 May 2015 (EDT)
- Between-strain
- 2, Tessa A. Morris 14:40, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:41, 20 May 2015 (EDT)