Dahlquist:SURP 2015 Schedule

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SURP 2015 Schedule

Week	Date	Wet Lab	GRNsight	GRNmap	Meetings & Events
1	Mon May 18			AM: How to wiki, PowerPoint overview PM: Within- and between-array normalization, one-strain ANOVA	All group members report to S120 for microarray data analysis Register for the OpenWetware Wiki if you haven't already
	Tues May 19			AM: Modified T test PM: Between-strain ANOVA, clustering with stem, preparation of GenMAPP input sheet, "Deception at Duke" video, "Baggerly: Forensic Bioinformatics" video, research ethics discussion	SURP BBQ, 12:00-1:00 PM, Bird's Nest
	Wed May 20	Decide which strain to label and hybridize to microarrays: Δino2, Δopi1, or Δyap1 Decide which strains to test for growth impairment in cold: Δarg80, Δrsf2, Δrtg3, Δtbf1, Δyhp1, Δyox1, Δphd1, Δnrg1 or other			Joint group meeting, 12:00-2:00 PM, S202 Nicole & Anu present journal club Shannon et al. (2003), Cytoscape
2	Tues May 26	AM: F1 cDNA synthesis PM: F1 cDNA purification, aRNA synthesis
	Wed May 27				Joint group meeting, 12:00-2:00 PM, S202 Monica & Kevin W. present journal club Hebly et al. (2014)
	Thurs May 28	AM: F1 aRNA purification, quantification PM: F1 aRNA gel			Glenn Johnson-Grau: workshop on searching the literature Nicole's last day
3	Mon June 1	AM: dry F1 aRNA, F1 cDNA synthesis PM: F1 label & hybe
	Tues June 2	AM: F1 wash & scan PM: F2 cDNA purification, aRNA synthesis
	Wed June 3	AM: F2 aRNA purification, quantification PM: F2 aRNA gel			Joint group meeting, 12:00-2:00 PM, S202 Natalie & Kevin M. present journal club Geistlinger et al. (2013)
4	Mon June 8	AM: dry F2 aRNA, F3 cDNA synthesis PM: F2 label & hybe
	Tues June 9	AM: F2 wash & scan PM: F3 cDNa purification, aRNA synthesis
	Wed June 10	AM: F3 aRNA purification, quantification PM: F3 aRNA gel			Joint group meeting, 12:00-2:00 PM, S202 (Grace), Tessa, & Trixie present journal club Vu & Vohradsky (2007)
5	Mon June 15	AM: dry F3 aRNA, F4 cDNA synthesis PM: F3 label & hybe			(KD at BioQUEST workshop)
	Tues June 16	AM: F3 wash & scan PM: F4 cDNA purification, aRNA synthesis			(KD at BioQUEST workshop)
	Wed June 17	AM: F4 aRNA purification, quantification PM: F4 aRNA gel			Joint group meeting, 12:00-2:00 PM, S202 Brandon & (Grace) presents journal club Natalie's last day
6	Mon June 22	AM: PM: F4 label & hybe
	Tues June 23	AM: F4 wash & scan
	Wed June 24	Lab check-out	Lab check-out	Lab check-out	Joint group meeting, 12:00-2:00 PM, S202 Everyone gives final research presentations SURP Abstracts due to Undergraduate.Research@lmu.edu

Strain Voting

Δino2

• Within-strain
  • 2, Katherine Grace Johnson 14:36, 20 May 2015 (EDT)
  • 1, Kevin Wyllie 14:39, 20 May 2015 (EDT)
  • 1, Natalie Williams 14:41, 20 May 2015 (EDT)
  • 1, Tessa A. Morris 14:48, 20 May 2015 (EDT)
  • 2, Kevin Patrick McGee 14:49, 20 May 2015 (EDT)
• Between-strain
  • 0, Katherine Grace Johnson 14:36, 20 May 2015 (EDT)
  • 0, Kevin Wyllie 14:39, 20 May 2015 (EDT)
  • 0, Natalie Williams 14:41, 20 May 2015 (EDT)
  • 0, Anindita Varshneya 14:47, 20 May 2015 (EDT)
  • 0, Tessa A. Morris 14:48, 20 May 2015 (EDT)
  • 0, Kevin Patrick McGee 14:49, 20 May 2015 (EDT)

Δopi1

• Within-Strain
  • 1 Katherine Grace Johnson 14:39, 20 May 2015 (EDT)
  • 0, Kevin Wyllie 14:40, 20 May 2015 (EDT)
  • 0, Natalie Williams 14:42, 20 May 2015 (EDT)
  • 0, Tessa A. Morris 14:47, 20 May 2015 (EDT)
  • 0, Kevin Patrick McGee 14:50, 20 May 2015 (EDT)
• Between-Strain
  • 0, Kevin Patrick McGee 14:50, 20 May 2015 (EDT)
  • 0 Katherine Grace Johnson 14:39, 20 May 2015 (EDT)
  • 0, Kevin Wyllie 14:40, 20 May 2015 (EDT)
  • 0, Natalie Williams 14:42, 20 May 2015 (EDT)
  • 0, Tessa A. Morris 14:47, 20 May 2015 (EDT)
  • 0, Anindita Varshneya 14:47, 20 May 2015 (EDT)

Δyap1

• Within-strain
  • 1, Katherine Grace Johnson 14:40, 20 May 2015 (EDT)
  • 2, Natalie Williams 14:44, 20 May 2015 (EDT)
  • 0, Tessa A. Morris 14:47, 20 May 2015 (EDT)
  • 1, Kevin Patrick McGee 14:50, 20 May 2015 (EDT)
• Between-strain
  • 0, Katherine Grace Johnson 14:40, 20 May 2015 (EDT)
  • 2, Natalie Williams 14:44, 20 May 2015 (EDT)
  • 2, Tessa A. Morris 14:47, 20 May 2015 (EDT)
  • 0, Anindita Varshneya 14:49, 20 May 2015 (EDT)
  • 0, Kevin Patrick McGee 14:50, 20 May 2015 (EDT)

Δarg80

• Within-strain
  • 0, Katherine Grace Johnson 14:41, 20 May 2015 (EDT)
  • 0, Tessa A. Morris 14:46, 20 May 2015 (EDT)
  • 0, Natalie Williams 14:47, 20 May 2015 (EDT)
  • 0, Kevin Patrick McGee 14:50, 20 May 2015 (EDT)
• Between-strain
  • 0 Katherine Grace Johnson 14:41, 20 May 2015 (EDT)
  • 0, Tessa A. Morris 14:46, 20 May 2015 (EDT)
  • 0, Natalie Williams 14:47, 20 May 2015 (EDT)
  • 0, Anindita Varshneya 14:49, 20 May 2015 (EDT)
  • 0, Kevin Patrick McGee 14:50, 20 May 2015 (EDT)

Δrsf2

• Within-Strain ANOVA
  • 2, Katherine Grace Johnson 14:44, 20 May 2015 (EDT)
  • 0, Tessa A. Morris 14:45, 20 May 2015 (EDT)
  • 2, Natalie Williams 14:48, 20 May 2015 (EDT)
• Between-strain ANOVA
  • 2, Kam D. Dahlquist 14:41, 20 May 2015 (EDT) (wt v. dZAP1)
  • 3, Katherine Grace Johnson 14:44, 20 May 2015 (EDT)
  • 0, Tessa A. Morris 14:45, 20 May 2015 (EDT)
  • 2, Natalie Williams 14:48, 20 May 2015 (EDT)

Δrtg3

• Within-strain
  • 0, Tessa A. Morris 14:45, 20 May 2015 (EDT)
  • 0, Katherine Grace Johnson 14:45, 20 May 2015 (EDT)
  • 2, Natalie Williams 14:49, 20 May 2015 (EDT)
• Between-strain ANOVA
  • 2, Kam D. Dahlquist 14:42, 20 May 2015 (EDT) (wt v. dZAP1)
  • 2, Tessa A. Morris 14:45, 20 May 2015 (EDT)
  • 2, Katherine Grace Johnson 14:45, 20 May 2015 (EDT)
  • 3, Natalie Williams 14:49, 20 May 2015 (EDT)

Δtbf1

• Within-strain
  • 0, Tessa A. Morris 14:44, 20 May 2015 (EDT)
  • 0, Katherine Grace Johnson 14:46, 20 May 2015 (EDT)
  • 0, Natalie Williams 14:49, 20 May 2015 (EDT)
  • 2, Kevin Wyllie 14:50, 20 May 2015 (EDT)
• Between-strain
  • 2, Kam D. Dahlquist 14:43, 20 May 2015 (EDT), (wt vs. dZAP1)
  • 0, Tessa A. Morris 14:44, 20 May 2015 (EDT)
  • 0, Katherine Grace Johnson 14:46, 20 May 2015 (EDT)
  • 3, Natalie Williams 14:49, 20 May 2015 (EDT)
  • 0, Kevin Wyllie 14:50, 20 May 2015 (EDT)

Δyhp1

• Within-strain
  • 0, Tessa A. Morris 14:42, 20 May 2015 (EDT)
  • 2, Katherine Grace Johnson 14:48, 20 May 2015 (EDT)
  • 0, Kevin Wyllie 14:49, 20 May 2015 (EDT)
  • 0, Natalie Williams 14:50, 20 May 2015 (EDT)
• Between-strain
  • 0, Tessa A. Morris 14:42, 20 May 2015 (EDT)
  • 0, Katherine Grace Johnson 14:48, 20 May 2015 (EDT)
  • 0, Kevin Wyllie 14:49, 20 May 2015 (EDT)
  • 2, Natalie Williams 14:50, 20 May 2015 (EDT)

Δyox1

• Within-strain
  • 1, Tessa A. Morris 14:41, 20 May 2015 (EDT)
  • 1, Kevin Wyllie 14:48, 20 May 2015 (EDT)
  • 2, Katherine Grace Johnson 14:49, 20 May 2015 (EDT)
• Between-strain
  • 0, Tessa A. Morris 14:41, 20 May 2015 (EDT)
  • 0, Kevin Wyllie 14:48, 20 May 2015 (EDT)
  • 0, Katherine Grace Johnson 14:49, 20 May 2015 (EDT)

Δphd1

• Within-strain
  • 0, Tessa A. Morris 14:41, 20 May 2015 (EDT)
  • 0, Kevin Wyllie 14:42, 20 May 2015 (EDT)
  • 1, Katherine Grace Johnson 14:50, 20 May 2015 (EDT)
• Between-strain
  • 0, Tessa A. Morris 14:41, 20 May 2015 (EDT)
  • 0, Kevin Wyllie 14:42, 20 May 2015 (EDT)
  • 2, Katherine Grace Johnson 14:50, 20 May 2015 (EDT)

Δnrg1

• Within-strain
  • 2, Tessa A. Morris 14:40, 20 May 2015 (EDT)
  • 1, Kevin Wyllie 14:41, 20 May 2015 (EDT)
• Between-strain
  • 2, Tessa A. Morris 14:40, 20 May 2015 (EDT)
  • 0, Kevin Wyllie 14:41, 20 May 2015 (EDT)