Dandekar & Chandler:Casein growth experiments

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(Concentrated base for PM)
(Concentrated base for PM)
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:Add other components, '''and dissolve in order given'''  
:Add other components, '''and dissolve in order given'''  
:Adjust to pH 6.8 before making to final volume of 1000 ml
:Adjust to pH 6.8 before making to final volume of 1000 ml
-
::A precipitate forms when adjusting the pH from the acid side of 6.8 with KOH (need about 100 ml of 1M KOH), but eventually will redissolve with stirring
+
::- A precipitate forms when adjusting the pH from the acid side of 6.8 with KOH (need about 100 ml of 1M KOH), but eventually will redissolve with stirring
-
:: When the pH is near 6.8, the color of the solution changes from a deep yellow to straw color  
+
::- When the pH is near 6.8, the color of the solution changes from a deep yellow to straw color  
:Filter sterilize and store in glass bottle '''wrapped with aluminum foil'''
:Filter sterilize and store in glass bottle '''wrapped with aluminum foil'''
-
:Store at 4ºC for ~one year.
+
:Store at 4ºC for ~one year
 +
 
 +
 
 +
===Metal 44===
 +
''for 1000 ml metal 44''
 +
{|
 +
|2.5 g || EDTA (free acid, not sodium salt)
 +
|-
 +
|10.95 g || ZnSO4·7H2O
 +
|-
 +
|5 g || FeSO4·7H2O
 +
|-
 +
|1.54 g || MnSO4·H2O
 +
|-
 +
|0.392 g || CuSO4·5H2O
 +
|-
 +
|0.25 g || Co(NO3)2·6H2O
 +
|-
 +
|0.177 g || Na2B4O7·10H2O
 +
|}
 +
Directions:
 +
:Add EDTA to 800 ml distilled water, stirring
 +
:Adjust pH to ~5.0 with 10M NaOH to dissolve EDTA
 +
:Add the other metals in the order given
 +
::- '''Do not add components until the previous one has completely dissolved!'''
 +
:Add ddH20 to final volume of 1000 ml
 +
::- Final pH should be around 2.4 and it should appear as a clear, lime green solution
 +
:Filter sterilize and store in glass bottle '''wrapped with aluminum foil'''
 +
:Store at 4ºC indefinitely
==Casein growth protocols==
==Casein growth protocols==

Revision as of 13:22, 6 March 2014

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Contents

Casein growth FYIs

  • 1% casein medium is somewhat opaque, but this is not why OD cannot be used as a measure of growth
  • As pseudomonas elastase/proteases break down casein, the turbidity in the tube increases as the bits of degraded protein accumulate
-- WT PAO1 will turn the tube milk white and completely opaque after ~4 hours after the first few days of passage into fresh medium
-- A LasR mutant should NOT show the milky tube phenotype! If it does, you have contamination
if you want to keep the casein solution you have made, be sure to keep a negative control to rule out contamination there
  • To enumerate growth, colony counts should be performed

Casein media recipes

1% casein medium

1% Casein sodium salt from bovine milk [from Sigma]

1x PM medium or 1x M9

- Stir at medium high speed until casein is dissolved (can take anywhere from 1-3 hours depending on how awesome your stir plate is)

- Filter sterilize

-- Note that filter surface area is the same size in the 250 ml and 500 ml filter sterilization units; because the filters will clog, it's better to aliquot into 250 ml or smaller bottles

PM Medium

for 1000 mL

Requires flushing with inert gas if using for anaerobic experiments (steps 1-4)

800 ml ddH2O

25 ml 0.5M Na2HPO4

25 ml 0.5M KH2PO4

10 ml 10% (NH4)2SO4

10 ml concentrated base (recipe follows)

- Bring volume to 1000 ml and pH to 6.8

- Autoclave for 45 min

For anaerobic experiments: 1. Pour PM into round flask, flush with argon gas for 30 min, close with rubber stopper, and place medium and 16 ml hungate tubes (including lids and rubber stopper) into anaerobic glove box

2. Pour 10 ml into hungate tubes, and close with rubber stopper and lid

3. Remove tubes from glove box and autoclave

4. Add carbon sources from sterile stock solutions (e.g., acetate and succinate)

Concentrated base for PM

for 1000 mL

20 g Nitrilotriacetic acid (NTA-free acid)
28.9 g MgSO4 anhydrous
6.67 g CaCl2·2H2O
0.0185 g (NH4)6Mo7O24·4H2O
0.198 g FeSO4·7H2O
100 ml Metal 44 (recipe follows)

Directions:

Dissolve NTA separately in 600 ml water and neutralize with KOH (14.6 g KOH)
Add other components, and dissolve in order given
Adjust to pH 6.8 before making to final volume of 1000 ml
- A precipitate forms when adjusting the pH from the acid side of 6.8 with KOH (need about 100 ml of 1M KOH), but eventually will redissolve with stirring
- When the pH is near 6.8, the color of the solution changes from a deep yellow to straw color
Filter sterilize and store in glass bottle wrapped with aluminum foil
Store at 4ºC for ~one year


Metal 44

for 1000 ml metal 44

2.5 g EDTA (free acid, not sodium salt)
10.95 g ZnSO4·7H2O
5 g FeSO4·7H2O
1.54 g MnSO4·H2O
0.392 g CuSO4·5H2O
0.25 g Co(NO3)2·6H2O
0.177 g Na2B4O7·10H2O

Directions:

Add EDTA to 800 ml distilled water, stirring
Adjust pH to ~5.0 with 10M NaOH to dissolve EDTA
Add the other metals in the order given
- Do not add components until the previous one has completely dissolved!
Add ddH20 to final volume of 1000 ml
- Final pH should be around 2.4 and it should appear as a clear, lime green solution
Filter sterilize and store in glass bottle wrapped with aluminum foil
Store at 4ºC indefinitely

Casein growth protocols

Starting casein cultures

4 days before the start of experiment

From frozen stock, streak to LB plate and grow O/N at 37°C

3 days before

Pick a single colony and inoculate into LB + 5mM MOPs buffer
Grow O/N at 37°C with shaking

2 days before

Into an 18 mm tube with 3 mL 1% casein, transfer 30 μL O/N LB culture (Day 1 casein culture')
Grow O/N at 37°C with shaking

1 day before

Into fresh 1% casein, transfer 100 μL from Day 1 casein culture to start Day 2 casein culture
Grow O/N at 37°C with shaking

Use this Day 2 culture to set up casein experiments

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