DataONE:ArrayExpress metadata study

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'''THIS PROJECT IS MID-DEVELOPMENT.  RESULTS HERE ARE UNSTABLE,  INCOMPLETE, AND PERHAPS WILDLY WRONG.'''  That said, please enjoy your reading in the spirit of [http://en.wikipedia.org/wiki/Open_Notebook_Science Open Notebook Science] and I'd love to hear your thoughts and suggestions :)
'''THIS PROJECT IS MID-DEVELOPMENT.  RESULTS HERE ARE UNSTABLE,  INCOMPLETE, AND PERHAPS WILDLY WRONG.'''  That said, please enjoy your reading in the spirit of [http://en.wikipedia.org/wiki/Open_Notebook_Science Open Notebook Science] and I'd love to hear your thoughts and suggestions :)
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=Aim=
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*See document (and edit, using link at the bottom of the doc page) at google docs:
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=Background=
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** https://docs.google.com/document/edit?id=1dKMv_YRq0-D_pqLHc9uvtpYA7jkKGWH2lZkJfaEn2Zs&hl=en
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=Methods=
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Downloaded ArrayExpress metadata using custom Python code on July 22, 2009.  Open Source: <<link to git>>.  (Note the one year gap.  This was due to an intervening thesis.  Also, updated metadata capture is not necessary because we would be ideally be capturing the metadata that existed at the time reusers would have been searching it... ) 
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Identified ArrayExpress reuse in PubMed Central using the ArrayExpress variant of the [[DataONE:Protocols/Find_GEO_reuses]] protocol. Reuses captured on July 19, 2010
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Downloaded Scopus citation counts for the PMIDs listed in the ArrayExpress metadata. Collected on July 19, 2010 using the [[DataONE:Protocols/Scopus_citation_counts_from_PMIDs]] protocol.
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=Results=
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* <<link to ArrayExpress metadata dataset>>
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* <<link to ArrayExpress reuse dataset>>
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* <<link to Scopus data>>
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=Discussion=
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Current revision

This DataONE OpenWetWare site contains informal notes for several research projects funded through DataONE. DataONE is a collaboration among many partner organizations, and is funded by the US National Science Foundation (NSF) under a Cooperative Agreement.

Home        People        Research        Summer 2010        Resources       


THIS PROJECT IS MID-DEVELOPMENT. RESULTS HERE ARE UNSTABLE, INCOMPLETE, AND PERHAPS WILDLY WRONG. That said, please enjoy your reading in the spirit of Open Notebook Science and I'd love to hear your thoughts and suggestions :)

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