Data Files

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[[Image:All.good.gz]]
[[Image:All.good.gz]]
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==Environment File==
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Here is the environment file you asked for.  Look it over to tell me if I need to add anything.  I left ??? for the Cox-Gilmore samples since I cannot seem to find my copy of it and thus do not know what they collected over.
== Phylogenetic Tree ==
== Phylogenetic Tree ==

Revision as of 20:43, 19 May 2009

Contents

Sequence files

  • Chimera-checking results
  • these include one summary file (excel spreadsheet) and three sequence files (fasta-formatted NAST alignments) with 6321 clean sequences, 44 sub-threshhold chimeric sequences, and 291 putative chimeric sequences

Image:All NAST Bel job17274.tgz

  • A fasta file of all the Clean Chimera-checked sequenced that were unclassified at the Genus level --James Angus Chandler 19:16, 24 April 2009 (EDT)

Media:Unclassified.fasta.gz

Taxonomy Assignments

  • there are three files here, each corresponds to one of the three chimera-checked sequence files above (i.e., putative, sub-threshold, and clean)
  1. clean sequences Image:Classifications All NAST.Bclean.fasta30593.xls
  2. sub-threshold chimeric sequences Image:Classifications All NAST.Bambig.fasta27959.xls
  3. putative chimeric sequences Image:Classifications All NAST.Bchimera.fasta28223.xls

Alignment

  • below is the most current version of the NAST-formatted alignment file.

Image:All.good.gz

Environment File

Here is the environment file you asked for. Look it over to tell me if I need to add anything. I left ??? for the Cox-Gilmore samples since I cannot seem to find my copy of it and thus do not know what they collected over.

Phylogenetic Tree

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