Data Files

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(Environment File)
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Here is the environment file you asked for.  Look it over to tell me if I need to add anything.  I left ??? for the Cox-Gilmore samples since I cannot seem to find my copy of it and thus do not know what they collected over.
Here is the environment file you asked for.  Look it over to tell me if I need to add anything.  I left ??? for the Cox-Gilmore samples since I cannot seem to find my copy of it and thus do not know what they collected over.
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[[Media:MainEnvFile.xls]]  --[[User:James Angus Chandler|James Angus Chandler]] 20:45, 19 May 2009 (EDT)
== Phylogenetic Tree ==
== Phylogenetic Tree ==

Revision as of 20:45, 19 May 2009

Contents

Sequence files

  • Chimera-checking results
  • these include one summary file (excel spreadsheet) and three sequence files (fasta-formatted NAST alignments) with 6321 clean sequences, 44 sub-threshhold chimeric sequences, and 291 putative chimeric sequences

Image:All NAST Bel job17274.tgz

  • A fasta file of all the Clean Chimera-checked sequenced that were unclassified at the Genus level --James Angus Chandler 19:16, 24 April 2009 (EDT)

Media:Unclassified.fasta.gz

Taxonomy Assignments

  • there are three files here, each corresponds to one of the three chimera-checked sequence files above (i.e., putative, sub-threshold, and clean)
  1. clean sequences Image:Classifications All NAST.Bclean.fasta30593.xls
  2. sub-threshold chimeric sequences Image:Classifications All NAST.Bambig.fasta27959.xls
  3. putative chimeric sequences Image:Classifications All NAST.Bchimera.fasta28223.xls

Alignment

  • below is the most current version of the NAST-formatted alignment file.

Image:All.good.gz

Environment File

Here is the environment file you asked for. Look it over to tell me if I need to add anything. I left ??? for the Cox-Gilmore samples since I cannot seem to find my copy of it and thus do not know what they collected over.

Media:MainEnvFile.xls --James Angus Chandler 20:45, 19 May 2009 (EDT)

Phylogenetic Tree

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