David Lowry: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
 
(433 intermediate revisions by 4 users not shown)
Line 1: Line 1:
==About me==
Michigan State University: Assistant Professor                        2014-Present
I am a second year graduate student in [http://www.biology.duke.edu/willislab/ Dr. Johh Willis' lab] at [http://www.duke.edu Duke].  You can check out a summary of my [http://upg.duke.edu/studentlife/lowry.html current research] in the [http://upg.duke.edu/ University Program in Genetics and Genomics]


==The ''Mimulus'' Community==
California State University, Monterey Bay: Assistant Professor          2014


===Labs===
The University of Texas at Austin: USDA NIFA Postdoctoral Fellow,    2010-2013
*[http://www.biology.duke.edu/willislab/labpeople.htm John Willis]
*[http://dbs.umt.edu/personnel/faculty/lila_fishman.htm Lila Fishman]
*[http://faculty.washington.edu/toby/ Toby Bradshaw]
*[http://www.genetics.forestry.ubc.ca/ritland/ Kermit Ritland]
*[http://www.plantbiology.msu.edu/schemske.shtml Doug Schemske]
*[http://www.ubcbotanicalgarden.org/research/cronk.php Quentin Cronk]
*[http://www.isu.edu/~bearpau2/ Paul Beardsley]
*[http://www.biology.utah.edu/faculty2.php?inum=49 Bob Vickery]
*[http://www.ku.edu/~eeb/faculty/kellyj.html John Kelly]
*[http://www3.uakron.edu/biology/mitchell/index.html Randall Mitchell]
*[http://www.uwm.edu/Dept/Biology/Docs/Faculty/karron.html Jeffery Karron]


===Post-Docs===
Duke University:                         PhD,                       2004-2010
[http://purugganan.gnets.ncsu.edu/people/people.html Megan Hall],
[http://www.biology.duke.edu/willislab/ACwebpage.htm Andrea Case],
[http://www.msu.edu/%7Eangertam/ Amy Angert],
Carrie Wu, Amy Bouck


===Grad Students===
The University of California, Berkeley:  BS,                        1997-2001
====[[Duke]]====
Arielle Cooley, Young-Wa Lee, Andrea Sweigart, David Lowry, Kevin Wright


====[[University of Washington]]====
==Research Interests==
Christina Pince, Kristy Brady


====[[Michigan State University]]====
[[Image:Perdenales.jpg|thumb|left|Switchgrass in its native riparian habitat in central Texas]]
[[Image:Lowry_field_2.JPG|thumb|right|Field experiment with ''Mimulus guttatus'']]


==''Mimulus'' web sites==
'''The genetics of adaptation and speciation'''


*Mark MacNair's collection of strange [http://www.ex.ac.uk/~MRMacnai/guttatus.html ''Mimulus guttatus'' relatives] from California
Adaptation is the most fundamental way that the environment can change the phenotypes of organisms.   Adaptations can also lead to the formation of reproductive isolating barriers, which are the building blocks of new speciesI am very interested in understanding the genetic underpinnings of reproductive isolation at various stages in the speciation process.
*The Willis Lab is quite excited about the release of the whole [http://www.jgi.doe.gov/sequencing/why/CSP2006/mimulus.html genome] of ''Mimulus guttatus'' next summerUpdates are avaliable on the Clemson University Genomics Institute [http://www.genome.clemson.edu/projects/mimulus/ website].
*[http://www.mimulusevolution.org/ Mimulus Biological Resource Center]


==Field Sites==
Understanding adaptation is also crucial to predicting how organisms will respond to future global change and will help inform management decisions as well as guide future agricultural breeding.


===United States===
'''Landscape evolutionary genomics'''
*[http://www.parks.ca.gov/default.asp?page_id=592 Copperopolis]
*[http://www.parks.ca.gov/default.asp?page_id=592 Montana de Oro State Park]
*[http://www.redshift.com/~bigcreek/ Big Creek Reserve]
*[http://www-bml.ucdavis.edu/ Bodega Marine Lab]
*[http://nrs.ucop.edu/Reserves/Angelo/Angelolinkingpage.html Angelo Reserve]
*[http://www.nps.gov/redw/ Redwood National Park]
*[http://www.oregonstateparks.org/park_197.php Saddle Mountain]


===Canada===
One of the core goals of my research program is to understand how the natural landscape molds the genomes of organisms through adaptation.  To that end, I am using a combination of genetic mapping and genome sequencing approaches to identify genes involved with adaptation to the heterogeneity of the natural landscape. During my dissertation, I focused on how adaptive alleles in ''Mimulus guttatus'' are spread across the landscape and what phenotypic effects they have in different environments across western North America. Currently, I am developing ''Panicum'' grasses as a model system to understand adaptation along a longitudinal soil moisture cline across Southwestern United States and a latitudinal temperature cline across the Great Plains. Our lab recently [http://www.utexas.edu/news/2012/08/02/biologist-grant-study-potential-biofuel-crops/ received funding from the Department of Energy] to develop ''Panicum hallii'' as a model system for local adaptation and bioenergy research.
*[http://www.portrenfrew.com/botbeach.htm Botanical Beach]
*[http://www.pc.gc.ca/pn-np/bc/gwaiihaanas/index_e.asp Gwaii Haanas]
*[http://www.bms.bc.ca/ Bamfield Marine Science Center]
*[http://www.pc.gc.ca/pn-np/bc/pacificrim/index_e.asp Pacific Rim National Park]


==Friends==
[[Image:Diversity.JPG|thumb|left|Phenotypic diversity of Switchgrass, ''Panicum virgatum'']]
[[Image:Field_2012.JPG|thumb|right|Field experiment with ''Panicum hallii'']]


[[Sri Kosuri|Sri Kosuri]]
'''Using evolutionary biology to improve bioenergy crops'''


==Quotes==
Civilization is built on a foundation of domesticated grasses.  Without those grasses (corn, wheat, rice, oats, barley, sorghum) there would be no ballet and human beings would never of landed on the moon.  Plant breeders have quietly worked in the shadows to increase the yield of crops and in turn maintain our modern world.
"There is keen delight in the quick experience, of knowing that no harm comes of a wetting at high canon wall, slips up behind the ridge to cross it by some windy broad-leaved hellebore, and beat down the mimulus beside the brook." -Mary Austin
 
Now, there may actually be potential to domesticate a new set of grass species to use to help combat the growing energy problem.  My research is focused understanding the factors involved in local adaptation in the bioenergy crop switchgrass (''Panicum virgatum'').  Loci involved in local adaptation are likely to be of high value to crop breeders interested in improving drought, heat, cold, herbivore, and disease tolerance.
 
==Publications==
 
'''PDFs for publications available through my''' [http://davidbryantlowry.wordpress.com/publications/ '''website''']
 
==Important Things==
 
*[http://davidbryantlowry.wordpress.com/ My website]
 
*[http://lowrylab.wordpress.com/david-lowry-cv/ David Lowry CV]
 
*[http://scholar.google.com/citations?view_op=list_works&hl=en&user=yp5xdBEAAAAJ&gmla=AJsN-F6DFaPZ9A0TNBwOFnsWZf9Y9S7rGntDIzs1ZOqg52GhHzGJ090M-xxUubHEHF3dyXE6XlN-jmJ1uYNJiAULSHsEkKAaqniu606ZwKxaDjIwB3wfiIkspwU-gntSRaYs7bNl5Mmy Google Scholar Citations ]
 
*[https://github.com/davidbryantlowry Programming Scripts on Github]
 
*'''Contact Info:''' You can contact me at davidbryantlowry@gmail.com.
 
*Make sure to check out the [[Mimulus Community]] and the [[Texas Switchgrass Collaborative]].

Latest revision as of 07:10, 16 November 2014

Michigan State University: Assistant Professor 2014-Present

California State University, Monterey Bay: Assistant Professor 2014

The University of Texas at Austin: USDA NIFA Postdoctoral Fellow, 2010-2013

Duke University: PhD, 2004-2010

The University of California, Berkeley: BS, 1997-2001

Research Interests

Switchgrass in its native riparian habitat in central Texas
Field experiment with Mimulus guttatus

The genetics of adaptation and speciation

Adaptation is the most fundamental way that the environment can change the phenotypes of organisms. Adaptations can also lead to the formation of reproductive isolating barriers, which are the building blocks of new species. I am very interested in understanding the genetic underpinnings of reproductive isolation at various stages in the speciation process.

Understanding adaptation is also crucial to predicting how organisms will respond to future global change and will help inform management decisions as well as guide future agricultural breeding.

Landscape evolutionary genomics

One of the core goals of my research program is to understand how the natural landscape molds the genomes of organisms through adaptation. To that end, I am using a combination of genetic mapping and genome sequencing approaches to identify genes involved with adaptation to the heterogeneity of the natural landscape. During my dissertation, I focused on how adaptive alleles in Mimulus guttatus are spread across the landscape and what phenotypic effects they have in different environments across western North America. Currently, I am developing Panicum grasses as a model system to understand adaptation along a longitudinal soil moisture cline across Southwestern United States and a latitudinal temperature cline across the Great Plains. Our lab recently received funding from the Department of Energy to develop Panicum hallii as a model system for local adaptation and bioenergy research.

Phenotypic diversity of Switchgrass, Panicum virgatum
Field experiment with Panicum hallii

Using evolutionary biology to improve bioenergy crops

Civilization is built on a foundation of domesticated grasses. Without those grasses (corn, wheat, rice, oats, barley, sorghum) there would be no ballet and human beings would never of landed on the moon. Plant breeders have quietly worked in the shadows to increase the yield of crops and in turn maintain our modern world.

Now, there may actually be potential to domesticate a new set of grass species to use to help combat the growing energy problem. My research is focused understanding the factors involved in local adaptation in the bioenergy crop switchgrass (Panicum virgatum). Loci involved in local adaptation are likely to be of high value to crop breeders interested in improving drought, heat, cold, herbivore, and disease tolerance.

Publications

PDFs for publications available through my website

Important Things

  • Contact Info: You can contact me at davidbryantlowry@gmail.com.