De la Cruz:Research

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('''Molecular Engines''')
('''Molecular Engines''')
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=='''Molecular Engines'''==
=='''Molecular Engines'''==
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DNA transfer across membranes and between cells by conjugation is a clear example of a rapid and natural way to acquire new genetic information, not only between bacteria, but also between yeast, plants and even animal cells. All conjugative systems contain a key protein in the membrane to carry out this process: the DNA transporter. In our system, the DNA transporter is TrwB and its crystallographic structure has been recently solved. The strong structural similarity between TrwB and other well known molecular motors, such as the ATP synthase or ring helicases, suggests that TrwB operates as a motor driving a DNA strand through the transport pore, using the energy derived from ATP hydrolysis. TrwB is the best model in a novel group of molecular motors involved in ssDNA transport across membranes; another example of biological molecular motors that convert chemical energy into mechanical work.
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DNA transfer across membranes and between cells by conjugation is a clear example of a rapid and natural way to acquire new genetic information, not only between bacteria, but also between yeast, plants and even animal cells. All conjugative systems contain a key protein in the membrane to carry out this process: the DNA transporter. In our system, the DNA transporter is TrwB and its crystallographic structure has been recently solved. [[Image:trwb.jpg|frame|right|TrwB, a molecular motor]]The strong structural similarity between TrwB and other well known molecular motors, such as the ATP synthase or ring helicases, suggests that TrwB operates as a motor driving a DNA strand through the transport pore, using the energy derived from ATP hydrolysis. TrwB is the best model in a novel group of molecular motors involved in ssDNA transport across membranes; another example of biological molecular motors that convert chemical energy into mechanical work.
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[[Image:trwb.jpg|frame|right|TrwB, a molecular motor]]
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To analyze the activity of TrwB, we are going to apply an emerging technique: nanotechnology, which makes possible single-molecule observation and manipulation. This technique will allow us to analyze in detail the DNA translocation process on TrwB and estimate the velocity and efficiency of this bionanomachine. Together with a biochemical and structural characterization of the protein, TrwB will be reconstituted into liposomes, a widely used vector in genetic therapy, to carry out DNA transport experiments through lipidic membranes. Reproduction of TrwB activity in vitro will constitute an important step for future biotechnological applications, such as DNA injection into animal cells for therapeutic purposes.
To analyze the activity of TrwB, we are going to apply an emerging technique: nanotechnology, which makes possible single-molecule observation and manipulation. This technique will allow us to analyze in detail the DNA translocation process on TrwB and estimate the velocity and efficiency of this bionanomachine. Together with a biochemical and structural characterization of the protein, TrwB will be reconstituted into liposomes, a widely used vector in genetic therapy, to carry out DNA transport experiments through lipidic membranes. Reproduction of TrwB activity in vitro will constitute an important step for future biotechnological applications, such as DNA injection into animal cells for therapeutic purposes.

Revision as of 06:26, 5 February 2008

Media:Conjugation

Image:cuatrologos.jpg

Contents

Evolution and Ecology

Molecular Engines

DNA transfer across membranes and between cells by conjugation is a clear example of a rapid and natural way to acquire new genetic information, not only between bacteria, but also between yeast, plants and even animal cells. All conjugative systems contain a key protein in the membrane to carry out this process: the DNA transporter. In our system, the DNA transporter is TrwB and its crystallographic structure has been recently solved.
TrwB, a molecular motor
TrwB, a molecular motor
The strong structural similarity between TrwB and other well known molecular motors, such as the ATP synthase or ring helicases, suggests that TrwB operates as a motor driving a DNA strand through the transport pore, using the energy derived from ATP hydrolysis. TrwB is the best model in a novel group of molecular motors involved in ssDNA transport across membranes; another example of biological molecular motors that convert chemical energy into mechanical work.

To analyze the activity of TrwB, we are going to apply an emerging technique: nanotechnology, which makes possible single-molecule observation and manipulation. This technique will allow us to analyze in detail the DNA translocation process on TrwB and estimate the velocity and efficiency of this bionanomachine. Together with a biochemical and structural characterization of the protein, TrwB will be reconstituted into liposomes, a widely used vector in genetic therapy, to carry out DNA transport experiments through lipidic membranes. Reproduction of TrwB activity in vitro will constitute an important step for future biotechnological applications, such as DNA injection into animal cells for therapeutic purposes.

Protein Engineering

Systems Biology

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