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*[http://www.openwetware.org/images/c/c4/Addend_pset_5.pdf Pset 5 addendum] | *[http://www.openwetware.org/images/c/c4/Addend_pset_5.pdf Pset 5 addendum] | ||
*[http://www.openwetware.org/wiki/Image:HW6_final.pdf Problem Set 6] | *[http://www.openwetware.org/wiki/Image:HW6_final.pdf Problem Set 6] | ||
*[http://www.openwetware.org/wiki/Image:HW7_final.pdf Problem Set 7] | |||
*[http://openwetware.org/wiki/Image:HW7_supplementary.zip Problem Set 7 Supplementary materials] | |||
*[http://openwetware.org/wiki/Image:HW8.pdf Problem Set 8] | |||
*[http://openwetware.org/wiki/Image:HW8_Materials.zip Problem Set 8 Supplementary materials] | |||
*[http://openwetware.org/wiki/Image:HW8_supplement2.zip Problem Set 8 Supplmentary materials 2] | |||
*[http://openwetware.org/wiki/Image:HW8Solution.pdf Problem Set 8 Solution] | |||
==Quizes== | ==Quizes== | ||
| Line 29: | Line 35: | ||
===Module 2=== | ===Module 2=== | ||
*[http://www.openwetware.org/images/3/35/Lab_2_v2.pdf Lab 2 (Version 2) Assignment] | |||
*[[Notes on Lab 2]] | *[[Notes on Lab 2]] | ||
*[http://www.media.mit.edu/nanoscale/courses/BE309/private/lect08/lect_dna.pdf Lab 2 Introduction] Scroll down | *[http://www.media.mit.edu/nanoscale/courses/BE309/private/lect08/lect_dna.pdf Lab 2 Introduction] Scroll down | ||
*[http://www.media.mit.edu/nanoscale/courses/AFMsite/cantilevers.html Probe information] | *[http://www.media.mit.edu/nanoscale/courses/AFMsite/cantilevers.html Probe information] | ||
*[http://www.openwetware.org/images/3/3e/Thermal_Noise_Lab_Advice.pdf Thermal Lab Noise Advice] | *[http://www.openwetware.org/images/3/3e/Thermal_Noise_Lab_Advice.pdf Thermal Lab Noise Advice] | ||
===Module 3=== | |||
*[http://scripts.mit.edu/~20.309/wiki/index.php?title=20.309/Labs/Fluorescence_Optical_Microscope#Fluorescence Fluorescence Optical Microscope] | |||
*[[Image:Lab_Requirements.doc| Lab 3 Requirements]] | |||
*[[Gaussian Fitting for Resolution]] | |||
*[[Winning Lab Report Criteria]] | |||
*[[Fluorescent Imaging Overlay]] | |||
*[[MSD in Matlab]] | |||
===Final Project=== | |||
*[http://www.openwetware.org/images/8/8d/Final_Project_Descriptions_Fall_2008.pdf Final Project Description] | |||
*[http://ocw.mit.edu/NR/rdonlyres/1380F2D0-A9B9-4FE8-9641-E12C3A09B98C/0/module4.pdf Optical Trapping] | |||
*[http://www.openwetware.org/images/e/e4/Optical_Trap_Poster_Presentations.pdf Poster Requirements] | |||
==Lectures== | ==Lectures== | ||
Lecture 1 9.5.08 F | Lecture 1 9.5.08 F | ||
[http://www.media.mit.edu/nanoscale/courses/BE309/private/lect08/lect_2.pdf Voltage dividers and electrical impedance] | [http://www.media.mit.edu/nanoscale/courses/BE309/private/lect08/lect_2.pdf Voltage dividers and electrical impedance] | ||
| Line 71: | Line 92: | ||
and [http://www.openwetware.org/images/c/c8/Lecture_notes_10.9_ps5related.pdf Lecture Notes (ps5 related)] | and [http://www.openwetware.org/images/c/c8/Lecture_notes_10.9_ps5related.pdf Lecture Notes (ps5 related)] | ||
Lecture 16 10.16.08 R [http://www.openwetware.org/wiki/Image: | Lecture 16 10.16.08 R [http://www.openwetware.org/wiki/Image:October16_Optics%26MIcroscopyI.pdf Optics & Microscopy I] | ||
Lecture 17 10.17.08 F [http://www.openwetware.org/wiki/Image:October17_Optics%26MicroscopyII_final.pdf Optics & Microscopy II] | |||
Lecture 18 10.21.08 T [http://openwetware.org/wiki/Image:October21_Optics%26MicroscopyIII.pdf Optics & Microscopy III] | |||
Lecture 19 10.23.08 R [http://openwetware.org/wiki/Image:October23_Optics%26MicroscopyIV.pdf Optics & Microscopy IV] | |||
Lecture 20 10.28.08 T [http://openwetware.org/wiki/Image:October_28_Optoelectronics_I.pdf Optoelectronics I] | |||
Lecture 21 10.30.08 R [http://openwetware.org/wiki/Image:October_30_Optoelectronics_II.pdf Optoelectronics II] | |||
Lecture 22 10.31.08 R [http://openwetware.org/wiki/Image:October_31_Optoelectronics_III.pdf Optoelectronics III] | |||
Lecture 23 11.04.08 T [http://openwetware.org/wiki/Image:November4_ImageProcessingI.pdf ImageProcessing I] | |||
Lecture 24 11.06.08 R [http://openwetware.org/wiki/Image:November6_ImageProcessingII.pdf ImageProcessing II] | |||
Lecture 25 11.07.08 F [http://openwetware.org/wiki/Image:November7_Fluorescence_Spectroscopy_I.pdf Fluorescence Spectroscopy I] | |||
Lecture 26 11.13.08 R [http://openwetware.org/wiki/Image:November13_Fluorescence_Spectroscopy_II_final.pdf Fluorescence Spectroscpy II] | |||
Lecture 27 11.14.08 F [http://openwetware.org/wiki/Image:November14_Fluorescence_Spectroscopy_III.pdf Fluorescence Spectroscopy III] | |||
Lecture 28 11.18.08 T [http://openwetware.org/wiki/Image:November_17_AdvancedFluorescenceMicroscopyI.pdf Advanced Fluorescence Microscopy I] | |||
Lecture 29 11.21.08 F [http://openwetware.org/wiki/Image:November21_AdvancedFluorescenceMicroscopyII.pdf Advanced Fluorescence Microscopy II] | |||
Lecture 30 12.2.08 T [http://openwetware.org/wiki/Image:December2_3DMicroscopy_Confocal.pdf 3D Microscopy I: Confocal] | |||
Lecture 31 12.4.08 R [http://openwetware.org/wiki/Image:LectureDec4.pdf 3D Microscopy II: Multiphoton] | |||
==Other Documents== | ==Other Documents== | ||
*[[20.309:DiodePrimer|Introduction to diodes]] | *[[20.309:DiodePrimer|Introduction to diodes]] | ||
Latest revision as of 10:48, 14 December 2008
Problem Sets
- Packet of Problem Sets: 20.309 course packet
- Problem Set 1 and Answers
- Problem Set 2 and Answers
- Problem Set 3 and Answers
- Problem Set 4 and Answers
- Pset 5 addendum
- Problem Set 6
- Problem Set 7
- Problem Set 7 Supplementary materials
- Problem Set 8
- Problem Set 8 Supplementary materials
- Problem Set 8 Supplmentary materials 2
- Problem Set 8 Solution
Quizes
Labs
Module 1
- DNA Melting Lab
- Lab 1 Report Requirements
- DNA Melting Data Analysis Advice
- Analyzing Data (filtering)
- Lab Comments Scroll to end
- DNA Melting Lab Simulation
- SYBR Green I
- PPG102A1 RTD
- Typical Amplifier Schematic Diagram & Datasheet
- DNA Sequence Information: QA Data zip file
- Calculate thermodynamic values: DinaMelt or OligoCalc
Module 2
- Lab 2 (Version 2) Assignment
- Notes on Lab 2
- Lab 2 Introduction Scroll down
- Probe information
- Thermal Lab Noise Advice
Module 3
- Fluorescence Optical Microscope
- File:Lab Requirements.doc
- Gaussian Fitting for Resolution
- Winning Lab Report Criteria
- Fluorescent Imaging Overlay
- MSD in Matlab
Final Project
Lectures
Lecture 1 9.5.08 F Voltage dividers and electrical impedance
Lecture 2 9.9.08 T RC Circuits
Lecture 3 9.11.08 R Filters
Lecture 4 9.12.08 F Thermodynamics of DNA melting
Lecture 5 9.16.08 T
Lecture 6 9.18.08 R Op-amp applications
Lecture 8 9.23.08 T Intro to Fourier Analysis
Lecture 10 9.26.08 F Sampling and Discrete Analysis
Lecture 11 9.30.08 T Convolution
Lecture 12 10.2.08 R Application of Convolution Theorem
Lecture 13 10.3.08 F Lab 1 Requirements and Lab 2 Intro
Lecture 15 10.9.08 R Ultimate Limits of Force and Position Detection and Lecture Notes (ps5 related)
Lecture 16 10.16.08 R Optics & Microscopy I
Lecture 17 10.17.08 F Optics & Microscopy II
Lecture 18 10.21.08 T Optics & Microscopy III
Lecture 19 10.23.08 R Optics & Microscopy IV
Lecture 20 10.28.08 T Optoelectronics I
Lecture 21 10.30.08 R Optoelectronics II
Lecture 22 10.31.08 R Optoelectronics III
Lecture 23 11.04.08 T ImageProcessing I
Lecture 24 11.06.08 R ImageProcessing II
Lecture 25 11.07.08 F Fluorescence Spectroscopy I
Lecture 26 11.13.08 R Fluorescence Spectroscpy II
Lecture 27 11.14.08 F Fluorescence Spectroscopy III
Lecture 28 11.18.08 T Advanced Fluorescence Microscopy I
Lecture 29 11.21.08 F Advanced Fluorescence Microscopy II
Lecture 30 12.2.08 T 3D Microscopy I: Confocal
Lecture 31 12.4.08 R 3D Microscopy II: Multiphoton
