Dunn:Publications: Difference between revisions
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=<center>'''Publications'''</center>= | =<center>'''Publications'''</center>= | ||
26. Borghi N, Sorokina M, Shcherbakova OG, Weis WI, Pruitt BL, Nelson WJ, '''Dunn''' AR. "E-cadherin is under constitutive actomyosin-generated tension that is increased at cell-cell contacts upon externally applied stretch." PNAS. 2012 July 16. [http://www.pnas.org/content/early/2012/07/10/1204390109.abstract Link] | |||
<span>[[Image:Dunn lab new icon mini.png]]</span> | |||
25. Adhikari AS, Glassey E, '''Dunn''' AR. "Conformational Dynamics Accompanying the Proteolytic Degradation of Trimeric Collagen I by Collagenases." JACS. 2012 June 21. [http://pubs.acs.org/doi/abs/10.1021/ja212170b Link] | |||
24. Adhikari AS, Chai J, '''Dunn''' AR. "Multiplexed Single-molecule Force Proteolysis Measurements Using Magnetic Tweezers." JoVE. 2012. [http://www.jove.com/video/3520/multiplexed-single-molecule-force-proteolysis-measurements-using Link] | |||
23. Adhikari AS, Mekhdjian AH, '''Dunn''' AR. "Strain Tunes Proteolytic Degradation and Diffusive Transport in Fibrin Networks." Biomacromolecules. 2011 Dec 20. [http://pubs.acs.org/doi/abs/10.1021/bm2015619 Link] | |||
22. Adhikari A, Chai J, '''Dunn''' AR. "Mechanical Load Induced a 100-fold increase in the Rate of Collagen Proteolysis by MMP-1." JACS. 2011 Jan 19. [http://www.ncbi.nlm.nih.gov/pubmed/21247159 Link] | |||
21. Chuan P, Spudich JA, '''Dunn''' AR. Robust Mechanosensing and Tension Generation by Myosin VI. J Mol Biol. 2010 Oct 21. [Epub ahead of print]. [http://www.ncbi.nlm.nih.gov/pubmed/20970430 Link] | |||
20. Sung J, Sivaramakrishnan S, '''Dunn''' AR, Spudich JA. Single-molecule dual-beam optical trap analysis of protein structure and function. Methods Enzymol. 2010;475:321-75. [http://www.ncbi.nlm.nih.gov/pubmed/20627164 Link] | |||
19. '''Dunn''' AR, Chuan P, Bryant Z, Spudich JA. Contribution of the myosin VI tail domain to processive stepping and intramolecular tension sensing. PNAS. 2010 Apr 12. [http://www.ncbi.nlm.nih.gov/pubmed/20385849 Link] | |||
18. Pierobon P, Achouri S, Courty S, '''Dunn''' AR, Spudich JA, Dahan M, Cappello G. Velocity, processivity, and individual steps of single myosin V molecules in live cells.. Biophys. J. 2009. 96(10):4268-75. [http://www.ncbi.nlm.nih.gov/pubmed/19450497 Link] | |||
17. '''Dunn''', A. R. & Spudich, J. A. Single-molecule gold-nanoparticle tracking with high temporal and spatial resolution and without an applied load. Laboratory Manual for Single Molecule Studies, (Cold Spring Harbor Laboratory Press, Woodbury, NY; 2007). [http://books.google.com/books?id=0F4FEBvuJSYC&pg=PP7&lpg=PP7&dq=Single-molecule+gold-nanoparticle+tracking+with+high+temporal+and+spatial+resolution+and+without+an+applied+load.++Laboratory+Manual+for+Single+Molecule+Studies&source=bl&ots=4di5pjrfBC&sig=G6S-S9P7ICSeiek-2QGFM88VpHg&hl=en&ei=kjucSvimKd32nQfg76CWCA&sa=X&oi=book_result&ct=result&resnum=7#v=onepage&q=&f=false Link] | 17. '''Dunn''', A. R. & Spudich, J. A. Single-molecule gold-nanoparticle tracking with high temporal and spatial resolution and without an applied load. Laboratory Manual for Single Molecule Studies, (Cold Spring Harbor Laboratory Press, Woodbury, NY; 2007). [http://books.google.com/books?id=0F4FEBvuJSYC&pg=PP7&lpg=PP7&dq=Single-molecule+gold-nanoparticle+tracking+with+high+temporal+and+spatial+resolution+and+without+an+applied+load.++Laboratory+Manual+for+Single+Molecule+Studies&source=bl&ots=4di5pjrfBC&sig=G6S-S9P7ICSeiek-2QGFM88VpHg&hl=en&ei=kjucSvimKd32nQfg76CWCA&sa=X&oi=book_result&ct=result&resnum=7#v=onepage&q=&f=false Link] | ||
16. Tang, S., Liao, J.-C., '''Dunn''', A. R., Altman, R. B., Spudich, J. A. & Schmidt, J. P. Predicting allosteric communication in myosin via a pathway of conserved residues. J. Mol. Biol. 373, 1361-1373 (2007). [http://www.ncbi.nlm.nih.gov/pubmed/17900617 Link] | 16. Tang, S., Liao, J.-C., '''Dunn''', A. R., Altman, R. B., Spudich, J. A. & Schmidt, J. P. Predicting allosteric communication in myosin via a pathway of conserved residues. J. Mol. Biol. 373, 1361-1373 (2007). [http://www.ncbi.nlm.nih.gov/pubmed/17900617 Link] | ||
15. '''Dunn''', A. R. & Spudich, J. A. Dynamics of the unbound head during myosin V processive translocation. Nat. Struct. Mol. Biol. 14,246-248 (2007). [http://www.ncbi.nlm.nih.gov/pubmed/17293871 Link] | 15. '''Dunn''', A. R. & Spudich, J. A. Dynamics of the unbound head during myosin V processive translocation. Nat. Struct. Mol. Biol. 14,246-248 (2007). [http://www.ncbi.nlm.nih.gov/pubmed/17293871 Link] | ||
14. Rock, R. S., Ramamurthy, B., '''Dunn''', A. R., Beccafico, S., Rami, B. R., Morris, C., Spink, B. J., Franzini-Armstrong, C., Spudich, J. A. & Sweeney, H. L. A flexible domain is essential for the large step size and processivity of myosin VI. Mol. Cell 17, 603-609 (2005). [http://www.ncbi.nlm.nih.gov/pubmed/16157884 Link] | 14. Rock, R. S., Ramamurthy, B., '''Dunn''', A. R., Beccafico, S., Rami, B. R., Morris, C., Spink, B. J., Franzini-Armstrong, C., Spudich, J. A. & Sweeney, H. L. A flexible domain is essential for the large step size and processivity of myosin VI. Mol. Cell 17, 603-609 (2005). [http://www.ncbi.nlm.nih.gov/pubmed/16157884 Link] | ||
13. Contakes, S. M., Juda, G. A., Langley, D. B., Halpern-Manners, N. W., Duff, A. P., '''Dunn''', A. R., Gray, H. B., Dooley, D. M., Guss, J. M. & Freeman, H. C. Reversible inhibition of copper amine oxidase activity by channel-blocking ruthenium(II) and rhenium(I) molecular wires. Proc. Natl. Acad. Sci. U.S.A. 102, 13451-12456 (2005). | |||
13. Contakes, S. M., Juda, G. A., Langley, D. B., Halpern-Manners, N. W., Duff, A. P., '''Dunn''', A. R., Gray, H. B., Dooley, D. M., Guss, J. M. & Freeman, H. C. Reversible inhibition of copper amine oxidase activity by channel-blocking ruthenium(II) and rhenium(I) molecular wires. Proc. Natl. Acad. Sci. U.S.A. 102, 13451-12456 (2005). [http://www.ncbi.nlm.nih.gov/pubmed/16157884 Link] | |||
12. Belliston-Bittner, W., '''Dunn''', A. R., Nguyen, Y. H. L., Stuehr, D. J., Winkler, J. R. & Gray, H. B. Picosecond photoreduction of inducible nitric oxide synthase by rhenium(I)-diimine wires. J. Am. Chem. Soc. 127, 15907-15915 (2005). [http://pubs.acs.org/doi/abs/10.1021/ja0543088 Link] | 12. Belliston-Bittner, W., '''Dunn''', A. R., Nguyen, Y. H. L., Stuehr, D. J., Winkler, J. R. & Gray, H. B. Picosecond photoreduction of inducible nitric oxide synthase by rhenium(I)-diimine wires. J. Am. Chem. Soc. 127, 15907-15915 (2005). [http://pubs.acs.org/doi/abs/10.1021/ja0543088 Link] | ||
11. '''Dunn''', A. R., Belliston-Bittner, W., Winkler, J. R., Getzoff, E. D., Stuehr, D. J. & Gray, H. B. Luminescent ruthenium(II)- and rhenium(I)-diimine wires bind nitric oxide synthase. J. Am. Chem. Soc. 127, 5169-5173 (2005). [http://pubs.acs.org/doi/abs/10.1021/ja046971m Link] | 11. '''Dunn''', A. R., Belliston-Bittner, W., Winkler, J. R., Getzoff, E. D., Stuehr, D. J. & Gray, H. B. Luminescent ruthenium(II)- and rhenium(I)-diimine wires bind nitric oxide synthase. J. Am. Chem. Soc. 127, 5169-5173 (2005). [http://pubs.acs.org/doi/abs/10.1021/ja046971m Link] | ||
10. Rucker, V. C., '''Dunn''', A. R., Sharma, S., Dervan, P. B. & Gray, H. B. Mechanism of sequence-specific fluorescent detection of DNA by N-methyl-imidazole, N-methyl-pyrrole, and β-alanine linked polyamides. J. Phys. Chem. B 108, 7490-7494 (2004). [http://pubs.acs.org/doi/full/10.1021/jp037423i Link] | 10. Rucker, V. C., '''Dunn''', A. R., Sharma, S., Dervan, P. B. & Gray, H. B. Mechanism of sequence-specific fluorescent detection of DNA by N-methyl-imidazole, N-methyl-pyrrole, and β-alanine linked polyamides. J. Phys. Chem. B 108, 7490-7494 (2004). [http://pubs.acs.org/doi/full/10.1021/jp037423i Link] | ||
9. Hays, A.-M. A., '''Dunn''', A. R., Chiu, R., Gray, H. B., Stout, C. D. & Goodin, D. B. Conformational states of cytochrome P450cam revealed by trapping of synthetic molecular wires. J. Mol. Biol. 2, 455-469 (2004). [http://www.ncbi.nlm.nih.gov/pubmed/15522298 Link] | 9. Hays, A.-M. A., '''Dunn''', A. R., Chiu, R., Gray, H. B., Stout, C. D. & Goodin, D. B. Conformational states of cytochrome P450cam revealed by trapping of synthetic molecular wires. J. Mol. Biol. 2, 455-469 (2004). [http://www.ncbi.nlm.nih.gov/pubmed/15522298 Link] | ||
8. '''Dunn''', A. R., Dmochowski, I. J., Winkler, J. R. & Gray, H. B. Nanosecond photoreduction of cytochrome P450cam by channel-specific electron tunneling Ru-diimine wires. J. Am. Chem. Soc. 41, 12450-12456 (2003). [http://www.ncbi.nlm.nih.gov/pubmed/14531688 Link] | 8. '''Dunn''', A. R., Dmochowski, I. J., Winkler, J. R. & Gray, H. B. Nanosecond photoreduction of cytochrome P450cam by channel-specific electron tunneling Ru-diimine wires. J. Am. Chem. Soc. 41, 12450-12456 (2003). [http://www.ncbi.nlm.nih.gov/pubmed/14531688 Link] | ||
7. '''Dunn''', A. R., Hays, A.-M. A., Goodin, D. B., Stout, C. D., Chiu, R., Winkler, J. R. & Gray, H. B. Fluorescent probes for cytochrome P450 structural characterization and inhibitor screening. J. Am. Chem. Soc. 124, 10254-10255 (2002). [http://www.ncbi.nlm.nih.gov/pubmed/12197708 Link] | 7. '''Dunn''', A. R., Hays, A.-M. A., Goodin, D. B., Stout, C. D., Chiu, R., Winkler, J. R. & Gray, H. B. Fluorescent probes for cytochrome P450 structural characterization and inhibitor screening. J. Am. Chem. Soc. 124, 10254-10255 (2002). [http://www.ncbi.nlm.nih.gov/pubmed/12197708 Link] | ||
6. Dmochowski, I. J., '''Dunn''', A. R., Wilker, J. J., Crane, B. R., Green, M., Dawson, J. H., Sligar, S. G., Winkler, J. R. & Gray, H. B. Ruthenium probes of P450 structure and mechanism. Meth. Enzymol. 357, 120-133 (2002). [http://www.ncbi.nlm.nih.gov/pubmed/12424904 Link] | 6. Dmochowski, I. J., '''Dunn''', A. R., Wilker, J. J., Crane, B. R., Green, M., Dawson, J. H., Sligar, S. G., Winkler, J. R. & Gray, H. B. Ruthenium probes of P450 structure and mechanism. Meth. Enzymol. 357, 120-133 (2002). [http://www.ncbi.nlm.nih.gov/pubmed/12424904 Link] | ||
5. '''Dunn''', A. R., Dmochowski, I. J., Bilwes, A. M., Gray, H. B. & Crane B. R. Probing the open state of cytochrome P450cam with ruthenium-linker substrates. Proc. Natl. Acad. Sci. U.S.A. 98, 12420-12425 (2001). [http://www.ncbi.nlm.nih.gov/pubmed/11606730 Link] | 5. '''Dunn''', A. R., Dmochowski, I. J., Bilwes, A. M., Gray, H. B. & Crane B. R. Probing the open state of cytochrome P450cam with ruthenium-linker substrates. Proc. Natl. Acad. Sci. U.S.A. 98, 12420-12425 (2001). [http://www.ncbi.nlm.nih.gov/pubmed/11606730 Link] | ||
4. Weck, M., '''Dunn''', A. R., Matsumoto, K., Coates, G. W., Lobkovsky, E. B. & Grubbs R. H. Influence of perfluoroarene-arene interactions on the phase behavior of liquid crystalline and polymeric materials. Angew. Chem. Int. Ed. Engl. 38, 2741-2745 (1999). [http://www.ncbi.nlm.nih.gov/pubmed/10508367 Link] | 4. Weck, M., '''Dunn''', A. R., Matsumoto, K., Coates, G. W., Lobkovsky, E. B. & Grubbs R. H. Influence of perfluoroarene-arene interactions on the phase behavior of liquid crystalline and polymeric materials. Angew. Chem. Int. Ed. Engl. 38, 2741-2745 (1999). [http://www.ncbi.nlm.nih.gov/pubmed/10508367 Link] | ||
3. Coates, G. W., '''Dunn''', A. R., Henling, L. M., Ziller, J. W., Lobkovsky, E. B. & Grubbs, R. H. Phenyl-perfluorophenyl stacking interactions: Topochemical[2+2] photodimerization and photopolymerization of olefinic compounds. J. Am. Chem. Soc. 120, 3641-3649 (1998). [http://pubs.acs.org/doi/full/10.1021/ja974072a Link] | 3. Coates, G. W., '''Dunn''', A. R., Henling, L. M., Ziller, J. W., Lobkovsky, E. B. & Grubbs, R. H. Phenyl-perfluorophenyl stacking interactions: Topochemical[2+2] photodimerization and photopolymerization of olefinic compounds. J. Am. Chem. Soc. 120, 3641-3649 (1998). [http://pubs.acs.org/doi/full/10.1021/ja974072a Link] | ||
2. Bloom, C. R., Wu, N., '''Dunn''', A., Kaarsholm, N. C. & Dunn, M. F. Comparison of the allosteric properties of the Co(II)- and Zn(II)-substituted insulin hexamers. Biochemistry 37, 10937-10944 (1998). [http://www.ncbi.nlm.nih.gov/pubmed/9692986 Link] | 2. Bloom, C. R., Wu, N., '''Dunn''', A., Kaarsholm, N. C. & Dunn, M. F. Comparison of the allosteric properties of the Co(II)- and Zn(II)-substituted insulin hexamers. Biochemistry 37, 10937-10944 (1998). [http://www.ncbi.nlm.nih.gov/pubmed/9692986 Link] | ||
1. Coates, G. W., '''Dunn''', A. R., Henling, L. M., Dougherty, D. A. & Grubbs, R. H. Phenyl-perfluorophenyl stacking interactions: A new strategy for supermolecule construction. Angew. Chem. Int. Ed. Engl. 36, 248-251 (1997). [http://www3.interscience.wiley.com/journal/106591843/abstract?CRETRY=1&SRETRY=0 Link] | 1. Coates, G. W., '''Dunn''', A. R., Henling, L. M., Dougherty, D. A. & Grubbs, R. H. Phenyl-perfluorophenyl stacking interactions: A new strategy for supermolecule construction. Angew. Chem. Int. Ed. Engl. 36, 248-251 (1997). [http://www3.interscience.wiley.com/journal/106591843/abstract?CRETRY=1&SRETRY=0 Link] | ||
=<center>'''Patents'''</center>= | |||
H. B. Gray, et al. "Detection of biomolecules by novel sensitizer-linked substrate molecules with high specificity and sensitivity", US7105310, filed July 19, 2000, issued Sept. 12, 2006. | H. B. Gray, et al. "Detection of biomolecules by novel sensitizer-linked substrate molecules with high specificity and sensitivity", US7105310, filed July 19, 2000, issued Sept. 12, 2006. | ||
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Publications
26. Borghi N, Sorokina M, Shcherbakova OG, Weis WI, Pruitt BL, Nelson WJ, Dunn AR. "E-cadherin is under constitutive actomyosin-generated tension that is increased at cell-cell contacts upon externally applied stretch." PNAS. 2012 July 16. Link
25. Adhikari AS, Glassey E, Dunn AR. "Conformational Dynamics Accompanying the Proteolytic Degradation of Trimeric Collagen I by Collagenases." JACS. 2012 June 21. Link
24. Adhikari AS, Chai J, Dunn AR. "Multiplexed Single-molecule Force Proteolysis Measurements Using Magnetic Tweezers." JoVE. 2012. Link
23. Adhikari AS, Mekhdjian AH, Dunn AR. "Strain Tunes Proteolytic Degradation and Diffusive Transport in Fibrin Networks." Biomacromolecules. 2011 Dec 20. Link
22. Adhikari A, Chai J, Dunn AR. "Mechanical Load Induced a 100-fold increase in the Rate of Collagen Proteolysis by MMP-1." JACS. 2011 Jan 19. Link
21. Chuan P, Spudich JA, Dunn AR. Robust Mechanosensing and Tension Generation by Myosin VI. J Mol Biol. 2010 Oct 21. [Epub ahead of print]. Link
20. Sung J, Sivaramakrishnan S, Dunn AR, Spudich JA. Single-molecule dual-beam optical trap analysis of protein structure and function. Methods Enzymol. 2010;475:321-75. Link
19. Dunn AR, Chuan P, Bryant Z, Spudich JA. Contribution of the myosin VI tail domain to processive stepping and intramolecular tension sensing. PNAS. 2010 Apr 12. Link
18. Pierobon P, Achouri S, Courty S, Dunn AR, Spudich JA, Dahan M, Cappello G. Velocity, processivity, and individual steps of single myosin V molecules in live cells.. Biophys. J. 2009. 96(10):4268-75. Link
17. Dunn, A. R. & Spudich, J. A. Single-molecule gold-nanoparticle tracking with high temporal and spatial resolution and without an applied load. Laboratory Manual for Single Molecule Studies, (Cold Spring Harbor Laboratory Press, Woodbury, NY; 2007). Link
16. Tang, S., Liao, J.-C., Dunn, A. R., Altman, R. B., Spudich, J. A. & Schmidt, J. P. Predicting allosteric communication in myosin via a pathway of conserved residues. J. Mol. Biol. 373, 1361-1373 (2007). Link
15. Dunn, A. R. & Spudich, J. A. Dynamics of the unbound head during myosin V processive translocation. Nat. Struct. Mol. Biol. 14,246-248 (2007). Link
14. Rock, R. S., Ramamurthy, B., Dunn, A. R., Beccafico, S., Rami, B. R., Morris, C., Spink, B. J., Franzini-Armstrong, C., Spudich, J. A. & Sweeney, H. L. A flexible domain is essential for the large step size and processivity of myosin VI. Mol. Cell 17, 603-609 (2005). Link
13. Contakes, S. M., Juda, G. A., Langley, D. B., Halpern-Manners, N. W., Duff, A. P., Dunn, A. R., Gray, H. B., Dooley, D. M., Guss, J. M. & Freeman, H. C. Reversible inhibition of copper amine oxidase activity by channel-blocking ruthenium(II) and rhenium(I) molecular wires. Proc. Natl. Acad. Sci. U.S.A. 102, 13451-12456 (2005). Link
12. Belliston-Bittner, W., Dunn, A. R., Nguyen, Y. H. L., Stuehr, D. J., Winkler, J. R. & Gray, H. B. Picosecond photoreduction of inducible nitric oxide synthase by rhenium(I)-diimine wires. J. Am. Chem. Soc. 127, 15907-15915 (2005). Link
11. Dunn, A. R., Belliston-Bittner, W., Winkler, J. R., Getzoff, E. D., Stuehr, D. J. & Gray, H. B. Luminescent ruthenium(II)- and rhenium(I)-diimine wires bind nitric oxide synthase. J. Am. Chem. Soc. 127, 5169-5173 (2005). Link
10. Rucker, V. C., Dunn, A. R., Sharma, S., Dervan, P. B. & Gray, H. B. Mechanism of sequence-specific fluorescent detection of DNA by N-methyl-imidazole, N-methyl-pyrrole, and β-alanine linked polyamides. J. Phys. Chem. B 108, 7490-7494 (2004). Link
9. Hays, A.-M. A., Dunn, A. R., Chiu, R., Gray, H. B., Stout, C. D. & Goodin, D. B. Conformational states of cytochrome P450cam revealed by trapping of synthetic molecular wires. J. Mol. Biol. 2, 455-469 (2004). Link
8. Dunn, A. R., Dmochowski, I. J., Winkler, J. R. & Gray, H. B. Nanosecond photoreduction of cytochrome P450cam by channel-specific electron tunneling Ru-diimine wires. J. Am. Chem. Soc. 41, 12450-12456 (2003). Link
7. Dunn, A. R., Hays, A.-M. A., Goodin, D. B., Stout, C. D., Chiu, R., Winkler, J. R. & Gray, H. B. Fluorescent probes for cytochrome P450 structural characterization and inhibitor screening. J. Am. Chem. Soc. 124, 10254-10255 (2002). Link
6. Dmochowski, I. J., Dunn, A. R., Wilker, J. J., Crane, B. R., Green, M., Dawson, J. H., Sligar, S. G., Winkler, J. R. & Gray, H. B. Ruthenium probes of P450 structure and mechanism. Meth. Enzymol. 357, 120-133 (2002). Link
5. Dunn, A. R., Dmochowski, I. J., Bilwes, A. M., Gray, H. B. & Crane B. R. Probing the open state of cytochrome P450cam with ruthenium-linker substrates. Proc. Natl. Acad. Sci. U.S.A. 98, 12420-12425 (2001). Link
4. Weck, M., Dunn, A. R., Matsumoto, K., Coates, G. W., Lobkovsky, E. B. & Grubbs R. H. Influence of perfluoroarene-arene interactions on the phase behavior of liquid crystalline and polymeric materials. Angew. Chem. Int. Ed. Engl. 38, 2741-2745 (1999). Link
3. Coates, G. W., Dunn, A. R., Henling, L. M., Ziller, J. W., Lobkovsky, E. B. & Grubbs, R. H. Phenyl-perfluorophenyl stacking interactions: Topochemical[2+2] photodimerization and photopolymerization of olefinic compounds. J. Am. Chem. Soc. 120, 3641-3649 (1998). Link
2. Bloom, C. R., Wu, N., Dunn, A., Kaarsholm, N. C. & Dunn, M. F. Comparison of the allosteric properties of the Co(II)- and Zn(II)-substituted insulin hexamers. Biochemistry 37, 10937-10944 (1998). Link
1. Coates, G. W., Dunn, A. R., Henling, L. M., Dougherty, D. A. & Grubbs, R. H. Phenyl-perfluorophenyl stacking interactions: A new strategy for supermolecule construction. Angew. Chem. Int. Ed. Engl. 36, 248-251 (1997). Link
Patents
H. B. Gray, et al. "Detection of biomolecules by novel sensitizer-linked substrate molecules with high specificity and sensitivity", US7105310, filed July 19, 2000, issued Sept. 12, 2006.
