Eccles: DGG Protocols: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
No edit summary
 
(33 intermediate revisions by 5 users not shown)
Line 1: Line 1:
'''siRNA Transfection'''
Back to [[Eccles Lab]]


='''Resuspending siRNA’s:'''
==Nucleic acid==
*[[Eccles:RNA_extraction_AJ | Total RNA isolation with Tri Reagent and columns (Aaron)]]
*[[Eccles:cDNA_Synthesis | cDNA synthesis (Jess Protocol)]]
*[[Eccles:DNA Isolation | DNA isolation (Jody Protocol)]]
*[[Eccles:PCR Product Sequencing | PCR product sequencing (Matt Protocol)]]
*[[Eccles:qPCR_Reaction | qPCR reaction (Jess Protocol)]]
*[[Eccles:random_panomer_hyb | Random oligo hyb (Aaron)]]
*[[Ajeffs:bioanalyzer | Bioanalyzer (Aaron)]]


*Add 100µL sterile MQ per 5nmol powdered siRNA.
==Cell culture==
*Gives a final concentration of 50µM siRNA in the tube.
*[[Eccles:cell_culture_CO2 | CO2 for cell culture]]
*Vortex to ensure all the siRNA is completely dissolved.
*[[Eccles:siRNA_Transfection | siRNA transfection (Jess Protocol)]]
*Store at -20°C.
*[[Eccles:AJ_siRNA_txn | siRNA forward transfection with Lipofectamine 2000 (Aaron)]]
*[[Eccles:AJ_siRNA_rev_txn | siRNA reverse transfection with Lipofectamine 2000 (96-well) or RNAiMAX (24-well) (Aaron)]]
*[[Eccles:Antisense_Transfection | Antisense transfection (Jess Protocol)]]
*[[Eccles:NZM_Cell_Culture | Culturing NZM cell lines (Jess Protocol)]]
*[[Eccles:Making_Primary_Cells_from_Tissue | Making primary cells from mouse tissue (Lana)]]
*[[Eccles:Making_Primary_Cells_from_Surgery_Tissue | Making primary cells from surgery tissue (Lana)]]
*[[Eccles:CB_Cell_Culture | Culturing CB cells (Mouse Embryonic Kidney Cells, SV40 large T positive)  (Lana)]]
*[[Eccles:Collagen_Coating_of_Cell_Culture_Vessels | Collagen coating of cell culture vessels (Lana)]]
*[[Eccles:HuADPKD_Cell_Culture | Culturing human ADPKD primary kidney cells (Lana)]]
*[[Eccles:MTT Assay (7d) on CB Cells | MTT Assay (7d) on CB Cells (Lana)]]
*[[Eccles:MKS Epithelial Cell Culture (Lynn)]]


==Protein==
*[[Eccles:Western_Blotting | Western Blotting (Lana)]]
*[[Eccles:Western_Blot_Stripping | Western Blot Stripping (Lana)]]
*[[Eccles:Protein_Lysates_from_Cells_in_Culture | Protein lysates from cells in culture (Lana)]]
*[[Eccles:Protein_Lysates_from_Tissue | Protein lysates from tissue (Lana)]]
*[[Eccles:LS_MITF_westerns | MITF western protocol (Lynn)]]


='''siRNA Transfection:'''
==Genotyping==
 
*[[Eccles:Pax2-1Neu_genotyping | Pax2-1Neu for WAVE dHPLC]]
*For one 24-well.
*1µL Lipofectamine 2000 + 49µL serum free OptiMEM.
*Incubate for 5 minutes.
*1µL 50µM siRNA + 49µL serum free OptiMEM.
*Add diluted siRNA to the Lipofectamine.
*Incubate for 25 minutes.
*Add 400µL serum free OpitMEM.
*500µL per well.
*Final concentration of siRNA per 24-well is 0.1µM.
*After 4 hours add 50µL FCS to give a final concentration of 10% per well.
*Culture for required length of time.

Latest revision as of 18:58, 1 December 2009