Ellis:Publications

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{{Ellis Top}}
{{Ellis Top}}
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'''Latest Update: Feb 2011'''
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'''Latest Update: Feb 2011 - CURRENTLY UPDATING to include PDFs and screenshots'''
<font face="trebuchet ms" style="color:#000000">We're in the lab right now working on new publications.
<font face="trebuchet ms" style="color:#000000">We're in the lab right now working on new publications.
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! Synthetic Biology Reviews
! Synthetic Biology Reviews
| DNA assembly for synthetic biology: from parts to pathways and beyond
| DNA assembly for synthetic biology: from parts to pathways and beyond
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| Ellis T, Adie T, Baldwin GS  
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| '''Ellis T''', Adie T, Baldwin GS  
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| Integrative Biology, Feb 2011, Vol 3, Page 109 [http://dx.doi.org/10.1039/c0ib00070a DOI Link]
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| '''Integrative Biolog'''y, Feb 2011, Vol 3, Page 109 [http://dx.doi.org/10.1039/c0ib00070a DOI Link]
| [http://openwetware.org/images/d/d0/TomEllisNHM.pdf PDF]
| [http://openwetware.org/images/d/d0/TomEllisNHM.pdf PDF]
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| [[Image:TomEllisNHM.jpg|200px|right|Intro to synthetic biology]]
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| [[Image:TomEllisNHM.jpg|160px|right|Integrative Biology]]
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! Synthetic Biology - by Tom Ellis
! Synthetic Biology - by Tom Ellis
| Diversity-based, model-guided construction of synthetic gene networks with predicted functions
| Diversity-based, model-guided construction of synthetic gene networks with predicted functions
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| Ellis T, Wang X, Collins JJ
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| '''Ellis T''', Wang X, Collins JJ
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| Nature Biotechnology, April 2009, Vol 27, Page 465 [http://dx.doi.org/10.1038/nbt.1536 DOI Link]
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| '''Nature Biotechnology''', April 2009, Vol 27, Page 465 [http://dx.doi.org/10.1038/nbt.1536 DOI Link]
| [http://openwetware.org/images/2/20/MetabolicEngineering.pdf PDF]
| [http://openwetware.org/images/2/20/MetabolicEngineering.pdf PDF]
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| [[Image:MetabolicEngineering.jpg|200px|right|Metabolic engineering]]
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| [[Image:MetabolicEngineering.jpg|160px|right|Nature Biotech]]
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!  
| Gene regulation: hacking the network on a sugar high
| Gene regulation: hacking the network on a sugar high
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| Ellis T, Wang X, Collins JJ
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| '''Ellis T''', Wang X, Collins JJ
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| Molecular Cell, 2008, Vol 30, Page 1 [http://dx.doi.org/10.1016/j.molcel.2008.03.005 DOI Link]
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| '''Molecular Cell''', 2008, Vol 30, Page 1 [http://dx.doi.org/10.1016/j.molcel.2008.03.005 DOI Link]
| [http://openwetware.org/images/6/6d/GenomeEngineering.pdf PDF]
| [http://openwetware.org/images/6/6d/GenomeEngineering.pdf PDF]
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| [[Image:GenomeEngineering.jpg|200px|right|Genome engineering]]
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| [[Image:GenomeEngineering.jpg|160px|right|Mol Cell]]
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!  
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| Synthesis and screening of regulatory component libraries for synthetic biology
| Synthesis and screening of regulatory component libraries for synthetic biology
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| Ellis T
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| '''Ellis T'''
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| Nature Protocols, 2009 Apr 23 [http://doi:10.1038/nprot.2009.79 DOI Link]
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| '''Nature Protocols''', April 2009 [http://doi:10.1038/nprot.2009.79 DOI Link]
| [http://openwetware.org/images/9/92/ICL09.pdf PDF]
| [http://openwetware.org/images/9/92/ICL09.pdf PDF]
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| [[Image:ICL09.jpg|200px|right|Imperial Interview]]
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| [[Image:ICL09.jpg|160px|right|Nature Protocols]]
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! Previous Publications - Tom Ellis  
! Previous Publications - Tom Ellis  
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| Exploiting diversity in synthesis to fast-track synthetic biology
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| Molecular recognition of DNA by rigid [N]-polynorbornane derived bifunctional intercalators: synthesis and evaluation of their binding properties
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| April 2009
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| Van Vliet LD, '''Ellis T''', Foley PJ, Liu L, Pfeffer FM, Russell RA, Warrener RN, Hollfelder F, Waring MJ
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| Advances in Synthetic Biology Conference, London 2009
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| '''Journal of Medicinal Chemistry''', 2007, Vol 50, Page 2326 [http://dx.doi.org/10.1021/jm0613020 DOI Link]
| [http://openwetware.org/images/8/8c/AdvancesLondon.pdf PDF]
| [http://openwetware.org/images/8/8c/AdvancesLondon.pdf PDF]
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| [[Image:AdvancesLondon.jpg|200px|right|Conference London 2009]]
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| [[Image:AdvancesLondon.jpg|160px|right|J Med Chem]]
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!  
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| Developing chassis fit for purpose
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| A 96-well DNase I footprinting screen for drug-DNA interactions
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| March 2010
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| '''Ellis T''', Evans DA, Martin CR, Hartley JA
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| Grand Challenges workshop at Imperial College London
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| '''Nucleic Acids Research''', 2007, Vol 35 [http://dx.doi.org/10.1093/nar/gkm467 DOI Link]
| [http://openwetware.org/images/b/bb/Chassis.pdf PDF]
| [http://openwetware.org/images/b/bb/Chassis.pdf PDF]
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| [[Image:Chassis.png|200px|right|E.coli as a chassis]]
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| [[Image:Chassis.png|160px|right|NAR]]
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!
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| Sequence-selective interaction of the minor-groove interstrand cross-linking agent SJG-136 with naked and cellular DNA: footprinting and enzyme inhibition studies
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| Martin C, '''Ellis T''', McGurk CJ, Jenkins TC, Hartley JA, Waring MJ, Thurston DE
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| '''Biochemistry''', 2005, Vol 44, Page 4135 [http://dx.doi.org/10.1021/bi0479813 DOI Link]
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| [http://openwetware.org/images/b/bb/Chassis.pdf PDF]
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| [[Image:Chassis.png|160px|right|Biochemistry]]
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!
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| DNase I footprinting of small molecule binding sites on DNA
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| Bailly C, Kluza J, Martin C, '''Ellis T''', Waring MJ
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| '''Methods in Molecular Biology''', 2005, Vol 288, Page 319 [http://dx.doi.org/10.1385/1-59259-823-4:319 DOI Link]
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| [http://openwetware.org/images/b/bb/Chassis.pdf PDF]
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| [[Image:Chassis.png|160px|right|Meth Mol Biol]]
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Revision as of 13:14, 26 February 2011

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Latest Update: Feb 2011 - CURRENTLY UPDATING to include PDFs and screenshots

We're in the lab right now working on new publications.

Title Authors Published PDF Screenshot
Synthetic Biology Reviews DNA assembly for synthetic biology: from parts to pathways and beyond Ellis T, Adie T, Baldwin GS Integrative Biology, Feb 2011, Vol 3, Page 109 DOI Link PDF
Integrative Biology
Synthetic Biology - by Tom Ellis Diversity-based, model-guided construction of synthetic gene networks with predicted functions Ellis T, Wang X, Collins JJ Nature Biotechnology, April 2009, Vol 27, Page 465 DOI Link PDF
Nature Biotech
Gene regulation: hacking the network on a sugar high Ellis T, Wang X, Collins JJ Molecular Cell, 2008, Vol 30, Page 1 DOI Link PDF
Mol Cell
Synthesis and screening of regulatory component libraries for synthetic biology Ellis T Nature Protocols, April 2009 DOI Link PDF
Nature Protocols
Previous Publications - Tom Ellis Molecular recognition of DNA by rigid [N]-polynorbornane derived bifunctional intercalators: synthesis and evaluation of their binding properties Van Vliet LD, Ellis T, Foley PJ, Liu L, Pfeffer FM, Russell RA, Warrener RN, Hollfelder F, Waring MJ Journal of Medicinal Chemistry, 2007, Vol 50, Page 2326 DOI Link PDF
J Med Chem
A 96-well DNase I footprinting screen for drug-DNA interactions Ellis T, Evans DA, Martin CR, Hartley JA Nucleic Acids Research, 2007, Vol 35 DOI Link PDF
NAR
Sequence-selective interaction of the minor-groove interstrand cross-linking agent SJG-136 with naked and cellular DNA: footprinting and enzyme inhibition studies Martin C, Ellis T, McGurk CJ, Jenkins TC, Hartley JA, Waring MJ, Thurston DE Biochemistry, 2005, Vol 44, Page 4135 DOI Link PDF
Biochemistry
DNase I footprinting of small molecule binding sites on DNA Bailly C, Kluza J, Martin C, Ellis T, Waring MJ Methods in Molecular Biology, 2005, Vol 288, Page 319 DOI Link PDF
Meth Mol Biol
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