Ellis:Publications: Difference between revisions

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{{Ellis Top}}
{{Ellis Top}}
'''Click the links to read our papers'''                                   


'''Latest Update: Feb 2011'''
<font face="trebuchet ms" style="color:#000000">We're in the lab right now working on new publications. '''Latest Update: MAR 2012'''
 
<font face="trebuchet ms" style="color:#000000">We're in the lab right now working on new publications.
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! || Title !! Authors !! Published !! PDF !! Screenshot  
! || Title !! Authors !! Published !! PDF !! Screenshot  
|-
! Synthetic Biology Research
| Rational Diversification of a Promoter Providing Fine-Tuned Expression and Orthogonal Regulation for Synthetic Biology
| '''Blount BA, Weenink T, Vasylechko S, Ellis T'''
| '''PLoS One''', March 2012 [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0033279 DOI Link]
| [http://openwetware.org/images/b/b7/TALORsPDF.pdf View PDF]
| [[Image:TALORs.jpg|160px|right|PLos One]]
|-
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|-
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! Synthetic Biology Reviews
! Synthetic Biology Reviews
| Construction of synthetic regulatory networks in yeast
| '''Blount BA, Weenink T, Ellis T'''
| '''FEBS Letters''', Feb 2012 [http://dx.doi.org/10.1016/j.febslet.2012.01.053 DOI Link]
| [http://openwetware.org/images/c/cd/FEBSEllis.pdf View PDF]
| [[Image:YSRNreview.jpg|160px|right|FEBS Letters]]
|-
!
| DNA assembly for synthetic biology: from parts to pathways and beyond
| DNA assembly for synthetic biology: from parts to pathways and beyond
| Ellis T, Adie T, Baldwin GS  
| '''Ellis T''', Adie T, Baldwin GS  
| Integrative Biology, Feb 2011, Vol 3, Page 109 [http://dx.doi.org/10.1039/c0ib00070a DOI Link]
| '''Integrative Biology''', Feb 2011, Vol 3, Page 109 [http://dx.doi.org/10.1039/c0ib00070a DOI Link]
| [http://openwetware.org/images/d/d0/TomEllisNHM.pdf PDF]
| [http://openwetware.org/images/2/2e/EllisAssembly.pdf View PDF]
| [[Image:TomEllisNHM.jpg|200px|right|Intro to synthetic biology]]
| [[Image:SynBioAssembly.jpg|160px|right|Integrative Biology]]
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! Synthetic Biology - by Tom Ellis
! Synthetic Biology by Tom Ellis
| Diversity-based, model-guided construction of synthetic gene networks with predicted functions
| Diversity-based, model-guided construction of synthetic gene networks with predicted functions
| Ellis T, Wang X, Collins JJ
| '''Ellis T''', Wang X, Collins JJ
| Nature Biotechnology, April 2009, Vol 27, Page 465 [http://dx.doi.org/10.1038/nbt.1536 DOI Link]
| '''Nature Biotechnology''', April 2009, Vol 27, Page 465 [http://dx.doi.org/10.1038/nbt.1536 DOI Link]
| [http://openwetware.org/images/2/20/MetabolicEngineering.pdf PDF]
| [http://openwetware.org/images/4/42/Biotech.pdf View PDF]
| [[Image:MetabolicEngineering.jpg|200px|right|Metabolic engineering]]
| [[Image:Biotech.jpg|160px|right|Nature Biotech]]
|-
|-
!  
!  
| Gene regulation: hacking the network on a sugar high
| Gene regulation: hacking the network on a sugar high
| Ellis T, Wang X, Collins JJ
| '''Ellis T''', Wang X, Collins JJ
| Molecular Cell, 2008, Vol 30, Page 1 [http://dx.doi.org/10.1016/j.molcel.2008.03.005 DOI Link]
| '''Molecular Cell''', 2008, Vol 30, Page 1 [http://dx.doi.org/10.1016/j.molcel.2008.03.005 DOI Link]
| [http://openwetware.org/images/6/6d/GenomeEngineering.pdf PDF]
| [http://openwetware.org/images/1/12/MolCell.pdf View PDF]
| [[Image:GenomeEngineering.jpg|200px|right|Genome engineering]]
| [[Image:Mol_Cell.jpg|160px|right|Mol Cell]]
|-
|-
!  
!  
| Synthesis and screening of regulatory component libraries for synthetic biology
| Synthesis and screening of regulatory component libraries for synthetic biology
| Ellis T
| '''Ellis T'''
| Nature Protocols, 2009 Apr 23 [http://doi:10.1038/nprot.2009.79 DOI Link]
| '''Nature Protocols''', April 2009 [http://www.nature.com/protocolexchange/protocols/561 DOI Link]
| [http://openwetware.org/images/9/92/ICL09.pdf PDF]
| [http://openwetware.org/images/9/94/Protocol.pdf View PDF]
| [[Image:ICL09.jpg|200px|right|Imperial Interview]]
| [[Image:ProtocolTom.jpg|160px|right|Nature Protocols]]
|-
|-
|
|
|-
|-
! Previous Publications - Tom Ellis  
! Previous Publications by Tom Ellis
| Exploiting diversity in synthesis to fast-track synthetic biology
| Novel C8-linked pyrrolobenzodiazepine (PBD)-heterocycle conjugates that recognize DNA sequences containing an inverted CCAAT box
| April 2009
| Brucoli F, Hawkins RM, James CH, Wells G, Jenkins TC, '''Ellis T''', Hartley JA, Howard PW, Thurston DE
| Advances in Synthetic Biology Conference, London 2009
| '''Bioorg Med Chem Letters''', 2011, Vol 21, Page 3780 [http://dx.doi.org/10.1016/j.bmcl.2011.04.054]
| [http://openwetware.org/images/8/8c/AdvancesLondon.pdf PDF]
| [http://openwetware.org/images/7/7d/PBDpaper.pdf View PDF]
| [[Image:AdvancesLondon.jpg|200px|right|Conference London 2009]]
| [[Image:PBDfootprint.jpg|160px|right|Bioorg Med Chem Lett]]
|-
!
| Molecular recognition of DNA by rigid [N]-polynorbornane derived bifunctional intercalators: synthesis and evaluation of their binding properties
| Van Vliet LD, '''Ellis T''', Foley PJ, Liu L, Pfeffer FM, Russell RA, Warrener RN, Hollfelder F, Waring MJ
| '''Journal of Medicinal Chemistry''', 2007, Vol 50, Page 2326 [http://dx.doi.org/10.1021/jm0613020 DOI Link]
| [http://openwetware.org/images/b/bd/MOLRAC.pdf View PDF]
| [[Image:MOLRAC.jpg|160px|right|J Med Chem]]
|-
!
| A 96-well DNase I footprinting screen for drug-DNA interactions
| '''Ellis T''', Evans DA, Martin CR, Hartley JA
| '''Nucleic Acids Research''', 2007, Vol 35 [http://dx.doi.org/10.1093/nar/gkm467 DOI Link]
| [http://openwetware.org/images/6/62/Footprinting.pdf View PDF]
| [[Image:96wellFootprint.jpg|160px|right|NAR]]
|-
!
| Sequence-selective interaction of the minor-groove interstrand cross-linking agent SJG-136 with naked and cellular DNA: footprinting and enzyme inhibition studies
| Martin C, '''Ellis T''', McGurk CJ, Jenkins TC, Hartley JA, Waring MJ, Thurston DE
| '''Biochemistry''', 2005, Vol 44, Page 4135 [http://dx.doi.org/10.1021/bi0479813 DOI Link]
| [http://openwetware.org/images/1/18/SJG-136.pdf View PDF]
| [[Image:SJG136.jpg|160px|right|Biochemistry]]
|-
|-
!  
!  
| Developing chassis fit for purpose
| DNase I footprinting of small molecule binding sites on DNA
| March 2010
| Bailly C, Kluza J, Martin C, '''Ellis T''', Waring MJ
| Grand Challenges workshop at Imperial College London
| '''Methods in Molecular Biology''', 2005, Vol 288, Page 319 [http://dx.doi.org/10.1385/1-59259-823-4:319 DOI Link]
| [http://openwetware.org/images/b/bb/Chassis.pdf PDF]
| Book Chapter
| [[Image:Chassis.png|200px|right|E.coli as a chassis]]
| [[Image:DNaseI.jpg|160px|right|Meth Mol Biol]]
|}
|}

Revision as of 02:35, 20 March 2012

Click the links to read our papers

We're in the lab right now working on new publications. Latest Update: MAR 2012

Title Authors Published PDF Screenshot
Synthetic Biology Research Rational Diversification of a Promoter Providing Fine-Tuned Expression and Orthogonal Regulation for Synthetic Biology Blount BA, Weenink T, Vasylechko S, Ellis T PLoS One, March 2012 DOI Link View PDF
PLos One
PLos One
Synthetic Biology Reviews Construction of synthetic regulatory networks in yeast Blount BA, Weenink T, Ellis T FEBS Letters, Feb 2012 DOI Link View PDF
FEBS Letters
FEBS Letters
DNA assembly for synthetic biology: from parts to pathways and beyond Ellis T, Adie T, Baldwin GS Integrative Biology, Feb 2011, Vol 3, Page 109 DOI Link View PDF
Integrative Biology
Integrative Biology
Synthetic Biology by Tom Ellis Diversity-based, model-guided construction of synthetic gene networks with predicted functions Ellis T, Wang X, Collins JJ Nature Biotechnology, April 2009, Vol 27, Page 465 DOI Link View PDF
Nature Biotech
Nature Biotech
Gene regulation: hacking the network on a sugar high Ellis T, Wang X, Collins JJ Molecular Cell, 2008, Vol 30, Page 1 DOI Link View PDF
Mol Cell
Mol Cell
Synthesis and screening of regulatory component libraries for synthetic biology Ellis T Nature Protocols, April 2009 DOI Link View PDF
Nature Protocols
Nature Protocols
Previous Publications by Tom Ellis Novel C8-linked pyrrolobenzodiazepine (PBD)-heterocycle conjugates that recognize DNA sequences containing an inverted CCAAT box Brucoli F, Hawkins RM, James CH, Wells G, Jenkins TC, Ellis T, Hartley JA, Howard PW, Thurston DE Bioorg Med Chem Letters, 2011, Vol 21, Page 3780 [1] View PDF
Bioorg Med Chem Lett
Bioorg Med Chem Lett
Molecular recognition of DNA by rigid [N]-polynorbornane derived bifunctional intercalators: synthesis and evaluation of their binding properties Van Vliet LD, Ellis T, Foley PJ, Liu L, Pfeffer FM, Russell RA, Warrener RN, Hollfelder F, Waring MJ Journal of Medicinal Chemistry, 2007, Vol 50, Page 2326 DOI Link View PDF
J Med Chem
J Med Chem
A 96-well DNase I footprinting screen for drug-DNA interactions Ellis T, Evans DA, Martin CR, Hartley JA Nucleic Acids Research, 2007, Vol 35 DOI Link View PDF
NAR
NAR
Sequence-selective interaction of the minor-groove interstrand cross-linking agent SJG-136 with naked and cellular DNA: footprinting and enzyme inhibition studies Martin C, Ellis T, McGurk CJ, Jenkins TC, Hartley JA, Waring MJ, Thurston DE Biochemistry, 2005, Vol 44, Page 4135 DOI Link View PDF
Biochemistry
Biochemistry
DNase I footprinting of small molecule binding sites on DNA Bailly C, Kluza J, Martin C, Ellis T, Waring MJ Methods in Molecular Biology, 2005, Vol 288, Page 319 DOI Link Book Chapter
Meth Mol Biol
Meth Mol Biol
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