Ellis:Publications: Difference between revisions
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'''Click the links to read our papers''' | '''Click the links to read our papers''' | ||
<font face="trebuchet ms" style="color:#000000">We're in the lab right now working on new publications. '''Latest Update: | <font face="trebuchet ms" style="color:#000000">We're in the lab right now working on new publications. '''Latest Update: APR 2015''' | ||
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! <b>Synthetic Biology</b> | ! <b>Synthetic Biology</b> | ||
| | |Quantifying cellular capacity identifies gene expression designs with reduced burden | ||
| | |'''Ceroni F''', '''Algar R''', Stan GB, '''Ellis T''' | ||
| '''ACS Synthetic Biology''', | | '''Nature Methods''', April 2015 [http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.3339.html DOI Link] | ||
| [http://openwetware.org/images/3/ | | [http://biorxiv.org/content/biorxiv/early/2014/12/22/013110.full.pdf View Preprint] | ||
| [[Image: | | [[Image:BurdenMon.png|160px|right|Burden Monitor]] | ||
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|BASIC: a new Biopart Assembly Standard for Idempotent Cloning provides accurate, single-tier DNA assembly for synthetic biology | |||
| Storch M, '''Casini A''', Mackrow B, Fleming T, Trewhitt H, '''Ellis T''', Baldwin GS | |||
| '''ACS Synthetic Biology''', March 2015 [http://pubs.acs.org/doi/abs/10.1021/sb500356d DOI Link] | |||
| [http://openwetware.org/images/0/02/BASIC_all.pdf View PDF] | |||
| [[Image:BASICimage.tif|160px|right|BASIC]] | |||
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|Expression-level dependent perturbation of cell proteostasis and nuclear morphology by aggregation-prone polyglutamine proteins | |||
| Lu M, Williamson N, Boschetti C, '''Ellis T''', Yoshimi T, Tunnacliffe A. | |||
| '''Biotechnology and Bioengineering''' online, April 2015 [http://onlinelibrary.wiley.com/doi/10.1002/bit.25606/abstract DOI Link] | |||
| Email to Request | |||
| [[Image:HEKpromlib.png|160px|right|HEK promoters]] | |||
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|Using Spinach Aptamer to Correlate mRNA and Protein Levels in Escherichia coli | |||
| '''Pothoulakis G''', '''Ellis T''' | |||
| '''Methods in Enzymology''' v550, Jan 2015 [http://www.sciencedirect.com/science/article/pii/S0076687914000482 DOI Link] | |||
| Book Chapter | |||
| [[Image:Spinachmeth.jpg|160px|right|Spinach]] | |||
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|How synthetic biology will reconsider natural bioluminescence and its applications | |||
| '''Reeve B''', Sanderson T, '''Ellis T''', Freemont P | |||
| '''Adv Biochem Eng Biotechnol.''' 2145:3-30, Sep 2014 [http://link.springer.com/chapter/10.1007%2F978-3-662-43619-6_1 DOI Link] | |||
| Book Chapter | |||
| [[Image:bioluminChap.jpg|160px|right|Biolum]] | |||
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|Total synthesis of a eukaryotic chromosome: Redesigning and SCRaMbLE-ing yeast | |||
| '''Jovicevic D''', '''Blount BA''', '''Ellis T''' | |||
| '''Bioessays''', Aug 2014 [http://onlinelibrary.wiley.com/doi/10.1002/bies.201400086/abstract DOI Link] | |||
| [http://openwetware.org/images/c/cf/DJSc20rev.pdf View PDF] | |||
| [[Image:DJSc20.jpg|160px|right|Sc20]] | |||
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|GeneGuard: A Modular Plasmid System Designed for Biosafety | |||
| '''Wright O''', '''Delmans M''', Stan GB, '''Ellis T''' | |||
| '''ACS Synthetic Biology''', May 2014 [http://pubs.acs.org/doi/abs/10.1021/sb500234s DOI Link] | |||
| [http://openwetware.org/images/3/37/GeneGuard.pdf View PDF] | |||
| [[Image:GeneGuard.jpg|160px|right|GeneGuard]] | |||
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! | ! |
Revision as of 02:48, 18 April 2015
Click the links to read our papers
We're in the lab right now working on new publications. Latest Update: APR 2015
Title | Authors | Published | Screenshot | ||
---|---|---|---|---|---|
Synthetic Biology | Quantifying cellular capacity identifies gene expression designs with reduced burden | Ceroni F, Algar R, Stan GB, Ellis T | Nature Methods, April 2015 DOI Link | View Preprint | |
BASIC: a new Biopart Assembly Standard for Idempotent Cloning provides accurate, single-tier DNA assembly for synthetic biology | Storch M, Casini A, Mackrow B, Fleming T, Trewhitt H, Ellis T, Baldwin GS | ACS Synthetic Biology, March 2015 DOI Link | View PDF | ||
Expression-level dependent perturbation of cell proteostasis and nuclear morphology by aggregation-prone polyglutamine proteins | Lu M, Williamson N, Boschetti C, Ellis T, Yoshimi T, Tunnacliffe A. | Biotechnology and Bioengineering online, April 2015 DOI Link | Email to Request | ||
Using Spinach Aptamer to Correlate mRNA and Protein Levels in Escherichia coli | Pothoulakis G, Ellis T | Methods in Enzymology v550, Jan 2015 DOI Link | Book Chapter | ||
How synthetic biology will reconsider natural bioluminescence and its applications | Reeve B, Sanderson T, Ellis T, Freemont P | Adv Biochem Eng Biotechnol. 2145:3-30, Sep 2014 DOI Link | Book Chapter | ||
Total synthesis of a eukaryotic chromosome: Redesigning and SCRaMbLE-ing yeast | Jovicevic D, Blount BA, Ellis T | Bioessays, Aug 2014 DOI Link | View PDF | ||
GeneGuard: A Modular Plasmid System Designed for Biosafety | Wright O, Delmans M, Stan GB, Ellis T | ACS Synthetic Biology, May 2014 DOI Link | View PDF | ||
The Sixth International Meeting on Synthetic Biology (SB6.0) Special Issue Editorial | Cai Y & Ellis T | ACS Synthetic Biology, Mar 2014 DOI Link | View PDF | ||
R2oDNA Designer: Computational Design of Biologically Neutral Synthetic DNA Sequences | Casini A, Christodoulou G, Freemont P, Baldwin GS, Ellis T, Macdonald JT | ACS Synthetic Biology, Jan 2014 DOI Link | View PDF | ||
Predicting translation initiation rates for designing synthetic biology | Reeve B, Hargest T, Gilbert C, Ellis T | Front. Bioeng. Biotechnol, Jan 2014 DOI Link | View PDF | ||
One-pot DNA construction for synthetic biology: the Modular Overlap-Directed Assembly with Linkers (MODAL) strategy | Casini A, Macdonald JT, De Jonghe J, Christodoulou G, Freemont P, Baldwin GS, Ellis T | Nucleic Acids Research, Oct 2013 DOI Link | View PDF | ||
Modelling the burden caused by gene expression: an in silico investigation into the interactions between synthetic gene circuits and their chassis cell | Algar R, Ellis T, Stan GB | arXiv Q-Bio, Sep 2013 DOI Link | View PDF | ||
Creation and characterization of component libraries for synthetic biology | Weenink T, Ellis T | Methods in Molecular Biology, 2013, Vol 1073, Page 51 DOI Link | Book Chapter | ||
Characterisation of genetic control elements for synthetic biology using the Spinach RNA aptamer | Pothoulakis G, Ceroni F, Reeve B, Ellis T | ACS Synthetic Biology, Sept 2013 DOI Link | View PDF | ||
Engineering of regulated stochastic cell fate determination | Wu W, Su RQ, Ellis T, Lai YC, Wang X | PNAS USA, 2013, Vol 110, Page 10610 DOI Link | View PDF | ||
Building-in Biosafety for Synthetic Biology | Wright O, Stan GB, Ellis T | Microbiology, 2013, Vol 159, Page 1221 DOI Link | View PDF | ||
Rational Diversification of a Promoter Providing Fine-Tuned Expression and Orthogonal Regulation for Synthetic Biology | Blount BA, Weenink T, Vasylechko S, Ellis T | PLoS One, 2012, Vol 7, Page e33279 DOI Link | View PDF | ||
Construction of synthetic regulatory networks in yeast | Blount BA, Weenink T, Ellis T | FEBS Letters, 2012, Vol 586, Page 2112 DOI Link | View PDF | ||
DNA assembly for synthetic biology: from parts to pathways and beyond | Ellis T, Adie T, Baldwin GS | Integrative Biology, 2011, Vol 3, Page 109 DOI Link | View PDF | ||
Diversity-based, model-guided construction of synthetic gene networks with predicted functions | Ellis T, Wang X, Collins JJ | Nature Biotechnology, 2009, Vol 27, Page 465 DOI Link | View PDF | ||
Synthesis and screening of regulatory component libraries for synthetic biology | Ellis T | Nature Protocols, 2009 DOI Link | View PDF | ||
Gene regulation: hacking the network on a sugar high | Ellis T, Wang X, Collins JJ | Molecular Cell, 2008, Vol 30, Page 1 DOI Link | View PDF | ||
DNA-Binding | An Extended PBD-Polyamide Conjugate with Selectivity for the ICB2 Transcription Factor Binding Site | Brucoli F, Hawkins RM, James CH, Jackson PJM, Wells G, Jenkins TC, Ellis T, Kotecha M, Hochhauser D, Hartley JA, Howard PW, Thurston DE | J Med Chem, 2013, Vol 56, Page 6339 DOI Link | View PDF | |
Novel C8-linked pyrrolobenzodiazepine (PBD)-heterocycle conjugates that recognize DNA sequences containing an inverted CCAAT box | Brucoli F, Hawkins RM, James CH, Wells G, Jenkins TC, Ellis T, Hartley JA, Howard PW, Thurston DE | Bioorg Med Chem Letters, 2011, Vol 21, Page 3780 DOI Link | View PDF | ||
Molecular recognition of DNA by rigid [N]-polynorbornane derived bifunctional intercalators: synthesis and evaluation of their binding properties | Van Vliet LD, Ellis T, Foley PJ, Liu L, Pfeffer FM, Russell RA, Warrener RN, Hollfelder F, Waring MJ | Journal of Medicinal Chemistry, 2007, Vol 50, Page 2326 DOI Link | View PDF | ||
A 96-well DNase I footprinting screen for drug-DNA interactions | Ellis T, Evans DA, Martin CR, Hartley JA | Nucleic Acids Research, 2007, Vol 35 DOI Link | View PDF | ||
Sequence-selective interaction of the minor-groove interstrand cross-linking agent SJG-136 with naked and cellular DNA: footprinting and enzyme inhibition studies | Martin C, Ellis T, McGurk CJ, Jenkins TC, Hartley JA, Waring MJ, Thurston DE | Biochemistry, 2005, Vol 44, Page 4135 DOI Link | View PDF | ||
DNase I footprinting of small molecule binding sites on DNA | Bailly C, Kluza J, Martin C, Ellis T, Waring MJ | Methods in Molecular Biology, 2005, Vol 288, Page 319 DOI Link | Book Chapter |