Ellis:Publications

Latest Update: April 2010

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Publications of the Ellis Lab will appear here when we have some. So far we're just starting up our lab.

Tom Ellis - Synthetic Biology

1. Ellis T, Wang X, and Collins JJ. Diversity-based, model-guided construction of synthetic gene networks with predicted functions. Nat Biotechnol. 2009 May;27(5):465-71. DOI:10.1038/nbt.1536 |
2. Ellis T, Wang X, and Collins JJ. Gene regulation: hacking the network on a sugar high. Mol Cell. 2008 Apr 11;30(1):1-2. DOI:10.1016/j.molcel.2008.03.005 |

Method Paper - Ellis T. Synthesis and screening of regulatory component libraries for synthetic biology Nature Protocols 2009 Apr 23. doi:10.1038/nprot.2009.79 Link

Tom Ellis - Previous Publications

3. Van Vliet LD, Ellis T, Foley PJ, Liu L, Pfeffer FM, Russell RA, Warrener RN, Hollfelder F, and Waring MJ. Molecular recognition of DNA by rigid [N]-polynorbornane-derived bifunctional intercalators: synthesis and evaluation of their binding properties. J Med Chem. 2007 May 17;50(10):2326-40. DOI:10.1021/jm0613020 |
4. Ellis T, Evans DA, Martin CR, and Hartley JA. A 96-well DNase I footprinting screen for drug-DNA interactions. Nucleic Acids Res. 2007;35(12):e89. DOI:10.1093/nar/gkm467 |
5. Martin C, Ellis T, McGurk CJ, Jenkins TC, Hartley JA, Waring MJ, and Thurston DE. Sequence-selective interaction of the minor-groove interstrand cross-linking agent SJG-136 with naked and cellular DNA: footprinting and enzyme inhibition studies. Biochemistry. 2005 Mar 22;44(11):4135-47. DOI:10.1021/bi0479813 |
6. Bailly C, Kluza J, Martin C, Ellis T, and Waring MJ. DNase I footprinting of small molecule binding sites on DNA. Methods Mol Biol. 2005;288:319-42. DOI:10.1385/1-59259-823-4:319 |