Endy:PiP

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This page is for keeping track of the status of papers in the Endy writing queue.

Research Manuscripts

FSP #1: Deterministic cell fate selection during phage lambda infection

• Authors: FSP, DE
• Status: Manuscript submitted to PNAS Track II on 5 September

Barry #1: Towards a biological virtual machine: an autoregulating network of RNA polymerases and ribosomes in Escherichia coli, or equivalent

• Authors: Barry, Drew
• Status: RNA work failed. Microscopy complete (?)
• Writing: First outline complete and under revision, Figures discussed
• Project page & Paper page.
• Goal: Barry, what's our goal?

Jason #1: Measurement kits and reference standards for characterizing BioBrick promoters and ribosome binding sites

• Authors: JK & DE
• Status: reviews received, JK and DE struggling through standards theory
• Open questions
• New paragraph level outline
• Goal: Resubmit by end of August

Jason #2: Programmed selection and preferential promotion of disadvantaged bacteria in a microfluidic sortostat, or equivalent

• Authors: JK & DE
• Status: Modeling scope, data analysis and writing needs to be completed
• OWW Page
• Goal: Submit by end of August

Reshma #1: Using genetically encoded odorant reporters to engineer bacteria that smell like wintergreen and banana

• Authors: RS & DE
• Status: reviews received, revision complete, sent to RC3 for his comments
• Goal: Resubmit by end of August

Reshma #2: Signal levels, load, and error rates in engineered transcriptional devices

• Authors: RS & DE
• Status: RS working on figures
• Goal: Submit by end of August

Samantha #1: Controlling cellular location by engineering phosphorylation

• Authors: SS & DE
• Status: In review at PLoS Biology
• Goal: Have in press in 2008

Samantha #2: Signals and specifications for a family of phosphorylation-dependent devices, or equivalent

• Authors: SS & DE
• Status: Outline and structure finalized, SS leading writing
• Goal: Submit by end of August

Ty #1: Tools for making systems biology models more scientific

• Authors: TT, DE
• Status: DE to do final edit, send to RB and TT for final approval
• Goal: Submit by end of August

Ty #2: Scaffold number in yeast signaling system sets tradeoff between system output and dynamic range

• Authors: TT, DE
• Status: sent to RB and TT for final review and approval
• Goal: Submit by end of August

Ty #3: Mechanics, Controls, and Modeling of Mating Pheromone-Initiated Signaling in the Yeast Saccharomyces cerevisiae: A Comprehensive Analysis

• Authors: TT, DE
• Status: JT and TT to edit (not working well, what should DE do?)
• Goal: Submit by ???

Sri #1: Measures & models of phage T7 mRNA

• Authors: HK, DE, SK
• Status: Sri needs to provide Fig 4, Drew needs to edit
• Goal: Submit by end of August

Drew #1: A common signal carrier for genetic devices

• Authors: Austin, Drew, Tom, Randy, Samantha
• Status: DE to expand and rewrite
• Goal: Submit by end of August

Drew #2: Free as in phosphoramidites, or equivalent

• Authors: DG and DE
• Status: DE to write
• Goal: Submit by end of August

BOOKS

DE #1:CoTS

• Authors: DE
• Status: DE outlining
• Goal: Proposal by end of August

DE #2:I2SB

• Authors: DE
• Status: DE outlining
• Goal: Outline by end of August

BLANK

Blank #1: Title, or equivalent

• Authors: your names here
• Status: your names here
• Goal: Submit by some date