Endy:PiP

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This page is for keeping track of the status of papers in the Endy writing queue.

Research Manuscripts

Barry #1: Model-based forward engineering of autocatalytic, self-regulating, and orthogonal gene expression systems in Escherichia coli

• Authors: Barry, Drew
• Status: Drew drafting for PNAS
• Writing: On Google Docs
• Project page & Paper page.
• Goal: Submit June 2009

Jason #2: Programmed selection and preferential promotion of microbes using a selectostat

• Authors: JK & DE
• Status: Endy drafting for PNAS
• Main Text on Google Docs
• Figures
• Supplement
• OWW Page
• Goal: Submit June 2009

Reshma #1: Using genetically encoded odorant reporters to engineer bacteria that smell like wintergreen and banana

• Authors: RS & DE
• Status: reviews received, revision complete, sent to RC3 for his comments
• Goal: submitted

Reshma #2: Signal levels, load, and error rates in engineered transcriptional devices

• Authors: RS & DE
• Status: RS working on figures
• Goal: Submit by end of August

Samantha #1: Controlling cellular location by engineering phosphorylation

• Authors: SS & DE
• Status: In review at PLoS Biology
• Goal: Have in press in 2008

Samantha #2: Signals and specifications for a family of phosphorylation-dependent devices, or equivalent

• Authors: SS & DE
• Status: Outline and structure finalized, SS leading writing
• Goal: Submit by end of August

Ty #1: Tools for making systems biology models more scientific

• Authors: TT, DE
• Status: DE to do final edit, send to RB and TT for final approval
• Goal: Submit by end of August

Ty #2: Scaffold number in yeast signaling system sets tradeoff between system output and dynamic range

• Authors: TT, DE
• Status: Submitted to MSB
• Goal: Get published ASAP.

Ty #3: Mechanics, Controls, and Modeling of Mating Pheromone-Initiated Signaling in the Yeast Saccharomyces cerevisiae: A Comprehensive Analysis

• Authors: TT, DE
• Status: JT and TT to edit (not working well, what should DE do?)
• Goal: Submit by ???

Sri #1: Measures & models of phage T7 mRNA

• Authors: HK, DE, SK
• Status: Sri needs to provide Fig 4, Drew needs to edit
• Goal: Submit by end of August

Drew #1: A common signal carrier for genetic devices

• Authors: Austin, Drew, Tom, Randy, Samantha
• Status: DE to expand and rewrite
• Goal: Submit by end of August

Drew #2: Free as in phosphoramidites, or equivalent

• Authors: DG and DE
• Status: DE to write
• Goal: Submit by end of August

BOOKS

DE #1:CoTS

• Authors: DE
• Status: DE outlining
• Goal: Proposal by end of August

DE #2:I2SB

• Authors: DE
• Status: DE outlining
• Goal: Outline by end of August

BLANK

Blank #1: Title, or equivalent

• Authors: your names here
• Status: your names here
• Goal: Submit by some date

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