Endy:Reprints: Difference between revisions
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'''Nicolas Koutsoubelis'''<br> | '''Nicolas Koutsoubelis'''<br> | ||
''Quantitative in silico and in vivo characterization of the recombinase addressable data storage''<br> | ''Quantitative in silico and in vivo characterization of the recombinase addressable data storage''<br> | ||
University of Freiburg | University of Freiburg BS @ Stanford, 2012 [[Media:Koutsoubelis BS Thesis Stanford Freiburg.pdf | thesis]] (PDF)<br> | ||
'''Sriram Kosuri'''<br> | '''Sriram Kosuri'''<br> | ||
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''Analysis of Targeted and Combinatorial Approaches to Phage T7 Genome Generation''<br> | ''Analysis of Targeted and Combinatorial Approaches to Phage T7 Genome Generation''<br> | ||
MIT MS, 2007 [http://dspace.mit.edu/bitstream/handle/1721.1/35880/MastersThesis.pdf?sequence=1 thesis] (PDF), doi: 1721.1/35880<br> | MIT MS, 2007 [http://dspace.mit.edu/bitstream/handle/1721.1/35880/MastersThesis.pdf?sequence=1 thesis] (PDF), doi: 1721.1/35880<br> | ||
'''Monica Ortiz'''<br> | |||
''Engineering bacterial populations via DNA messaging''<br> | |||
Stanford PhD, 2013 [http://purl.stanford.edu/ht577gs4955 dissertation] (PDF)<br> | |||
'''Beatrice Ramm'''<br> | |||
''Observations, quantitation and application of contact-dependent growth inhibition for controlling cell growth and patterning''<br> | |||
Technische Universität München MS @ Stanford, 2015 [[Media:MasterThesis Beatrice Ramm.pdf | thesis]] (PDF)<br> | |||
'''Reshma Shetty''' (co-advisee with Tom Knight<br> | '''Reshma Shetty''' (co-advisee with Tom Knight<br> | ||
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''Determination of cell fate selection during phage lambda infection''<br> | ''Determination of cell fate selection during phage lambda infection''<br> | ||
MIT PhD, 2009 [[Media:StPierre thesis rev2.PDF | dissertation]] (PDF), doi: pending<br> | MIT PhD, 2009 [[Media:StPierre thesis rev2.PDF | dissertation]] (PDF), doi: pending<br> | ||
'''Pakpoom Subsoontorn'''<br> | |||
''Reliable functional composition of a recombinase device family''<br> | |||
Stanford PhD, 2014 [http://purl.stanford.edu/sm186rb9123 dissertation] (PDF)<br> | |||
'''Samantha Sutton'''<br> | '''Samantha Sutton'''<br> | ||
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'''2003 Synthetic Biology study'''<br> | '''2003 Synthetic Biology study'''<br> | ||
'' | ''DARPA ISAT Study'' & briefing to Director, October 2003<br> | ||
[[Drew Endy]], | [[Drew Endy]], Pat Lincoln, Richard Murray<br> | ||
[[doi:1721.1/38455]] | [[doi:1721.1/38455]] | ||
Revision as of 09:58, 10 March 2015
Student DissertationsBarry Canton Jeff Gritton Jason Kelly Nicolas Koutsoubelis Sriram Kosuri Alex Mallet Monica Ortiz Beatrice Ramm Reshma Shetty (co-advisee with Tom Knight Francois St-Pierre Pakpoom Subsoontorn Samantha Sutton Ty Thompson Peer Reviewed Research ArticlesOne-step cloning and chromosomal integration of DNA A survey of enabling technologies in synthetic biology Amplifying genetic logic gates Measurement and modeling of intrinsic transcription terminators Precise and reliable gene expression via standard transcription and translation initiation elements Quantitative estimation of activity and quality for collections of functional genetic elements. Design and analysis of genetically encoded counters A fully decompressed synthetic bacteriophage øX174 genome assembled and archived in yeast Engineered cell-cell communication via DNA messaging Refactored M13 bacteriophage as a platform for tumor cell imaging and drug delivery Rewritable digital data storage in live cells via engineered control of recombination directionality Scaffold number in yeast signaling system sets tradeoff between system output and dynamic range Gemini, a bifunctional enzymatic and fluorescent reporter of gene expression Measuring the activity of BioBrick promoters using an in vivo reference standard Determination of cell fate selection during phage lambda infection Refinement and standardization of synthetic biological parts and devices Engineering BioBrick vectors from BioBrick parts Stimulus design for model selection and validation in cell signaling TABASCO: A single molecule, base-pair resolved gene expression simulator DNA synthesis and biological security Synthetic genomics: Options for governance Foundations for engineering biology Refactoring bacteriophage T7 Regulated cell to cell variation in a cell fate decision system Modelling cellular behaviour (insight feature) Computation, prediction, and experimental test of fitness for bacteriophage T7 mutants with permuted genomes Toward antiviral strategies that resist viral escape Intracellular kinetics of a growing virus: A genetically-structured simulation for bacteriophage T7 Transcribed LecturesSynthetic biology: Can we make biology easy to engineer? <--note: transcription was not proofed Other Articles, edited but not peer reviewedSwitches, switches, every where, in any drop we drink Cribsheet #16: Synthetic Biology Reconstruction of the genomes Building a fab for biology A biological engineer searches for simplicity Useful construction 2003 Synthetic Biology study Molecular monogamy Decoding NF-kB signaling A standard parts list for biological circuitry BooksSynthetic Aesthetics: Investigating Synthetic Biology's Designs on Nature Adventures in synthetic biology Edited Book ChaptersSynthetic Biology Towards a predictive biology: The example of bacteriophage T7 Selected Online Lectures or DebatesSynthetic Biology Debate with Jim Thomas, moderated by Stewart Brand Programming DNA: A 2-bit language for engineering biology |