- Note: We also publish thesis proposals, dissertations, and technical reports via DSpace, an online digital repository operated by the MIT Library.
- Note: PDF reprints are provided below within the context of fair use. Please obtain copies from the publisher if appropriate.
Peer Reviewed Articles
Refinement and standardization of synthetic biological parts and devices
Nature Biotechnology, 2008 July; 26(6), 787-93 URL
Barry Canton, Anna Labno, Drew Endy
News & Views by Adam Arkin, Setting the standard in synthetic biology URL
Engineering BioBrick vectors from BioBrick parts
Journal of Biological Engineering, 2008 Apr 14;2:5, URL
Reshma Shetty, Drew Endy, Tom Knight
Stimulus design for model selection and validation in cell signaling
PLoS Comput Biol. 2008 Feb 15;4(2):e30, URL
Josh Apgar, Jared Toettcher, Drew Endy, Forest White, Bruce Tidor
TABASCO: A single molecule, base-pair resolved gene expression simulator
BMC Bioinformatics 2007, 8:480, URL
Sriram Kosuri, Jason R Kelly, Drew Endy
DNA synthesis and biological security
Nature Biotechnology June 2007, URL
PDF reprint
Hans Bugl, John P Danner, Robert J Molinari, John T Mulligan, Han-Oh Park, Bas Reichert, David A Roth, Ralf Wagner, Bruce Budowle, Robert M Scripp, Jenifer A L Smith, Scott J Steele, George Church & Drew Endy
Synthetic genomics: Options for governance
Biosecur Bioterror 2007 Dec;5(4):359-62, URL (Full Report)
Michele Garfinkel, Drew Endy, Gerald Epstein, Robert Friedman
Foundations for engineering biology
Nature 24 November 2005 doi:10.1038/nature04342, URL
PDF reprint
Drew Endy
Refactoring bacteriophage T7
Nature/EMBO Molecular Systems Biology 13 September 2005 doi:10.1038/msb4100025
Leon Y. Chan, Sriram Kosuri and Drew Endy
URL
PDF reprint
News & Views
October 2004 version
Regulated cell to cell variation in a cell fate decision system
Nature 18 September 2005 doi:10.1038/nature03998
Alejandro Colman-Lerner, Andrew Gordon, Eduard Serra, Tina Chin, Orna Resnekov, Drew Endy, C. Gustavo Pesce and Roger Brent
URL
PDF reprint
News & Views
Modelling cellular behaviour (insight feature)
Nature 409, 391-395
Drew Endy and Roger Brent
PDF reprint
Computation, prediction, and experimental test of fitness for bacteriophage T7 mutants with permuted genomes
Proceedings of the National Academy of Sciences USA 97, 5375-5380
Drew Endy, Lingchong You, John Yin and Ian Molineux
PDF reprint
Toward antiviral strategies that resist viral escape
Antimicrobial Agents & Chemotherapy 44, 1097-1099
Drew Endy and John Yin
PDF reprint
Intracellular kinetics of a growing virus: A genetically-structured simulation for bacteriophage T7
Biotechnology & Bioengineering 55, 375-389
Drew Endy, Deyu Kong, and John Yin
PDF reprint
Other Articles, Not Peer Reviewed
Reconstruction of the genomes
Science 2008 Feb 29;319(5867):1196-7
Drew Endy
URL
PDF reprint
Building a fab for biology
Scientific American June 2006
David Baker, George Church, Jim Collins, Drew Endy, Joe Jacobson, Jay Keasling, Paul Modrich, Christina Smolke, Ron Weiss
PMID: 16711359
A biological engineer searches for simplicity
Nature 449, 5
Drew Endy
URL
Useful construction
The Scientist January 2006
Drew Endy
URL
2003 Synthetic Biology study
US Government October 2003
Drew Endy, Patrick Lincoln, Richard Murray
doi:1721.1/38455
Molecular monogamy
Nature 426, 614-615
Drew Endy and Michael B. Yaffe
PDF reprint
Decoding NF-kB signaling
Science 298, 1189-1190
Alice Y. Ting and Drew Endy
PDF reprint
A standard parts list for biological circuitry
DARPA white paper October 1999
Drew Endy, Adam Arkin
doi:1721.1/29794
Books
Adventures in synthetic biology
Nature 24 November 2005 Cover & Online
Drew Endy, Isadora Deese and Chuck Wadey
PDF, links, and background information
For a reprint, please email isadora AT mit DOT edu
Book Chapters
Towards a predictive biology: The example of bacteriophage T7
Evolution as Computation, Landweber & Winfree (eds.), DIMACS Workshop, Princeton, 1999, 201-209 (book chapter).
Drew Endy
no e-print currently available (sorry!)
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