Endy:Victor3 counteracting evaporation in long time courses: Difference between revisions
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Also see: [[Endy:Victor3 plate reader|Victor3 plate reader]] | Also see: [[Endy:Victor3 plate reader|Victor3 plate reader]] | ||
==Source== | |||
*Rosenfeld et al. J. Mol. Biol. (2002) 323, 5, pp785-93. | *Rosenfeld et al. J. Mol. Biol. (2002) 323, 5, pp785-93. | ||
==Protocol== | |||
*Add an injection step into the Victor protocol to inject 12ul of DI water into each well every 25mins if doing an experiment. Or add water at any time interval that leads to a rate of .48ul/min. | *Add an injection step into the Victor protocol to inject 12ul of DI water into each well every 25mins if doing an experiment. Or add water at any time interval that leads to a rate of .48ul/min. | ||
*I believe this is a slightly faster rate of addition than used in the article above. | *I believe this is a slightly faster rate of addition than used in the article above. | ||
**Note: Check the water reservoir before beginning the protocol to ensure that there is sufficient water for the length of your protocol. 96 wells, measured over 24 hours, will require slightly more than 50 mL. | **Note: Check the water reservoir before beginning the protocol to ensure that there is sufficient water for the length of your protocol. 96 wells, measured over 24 hours, will require slightly more than 50 mL. | ||
==Notes== | |||
*This can keep well volume constant over a 10 hour protocol at 37°C. | *This can keep well volume constant over a 10 hour protocol at 37°C. | ||
| Line 15: | Line 15: | ||
*I have not used the method at temperatures other than 37°C. | *I have not used the method at temperatures other than 37°C. | ||
**'''[[User:Reshma P. Shetty|Reshma]] 21:09, 7 June 2007 (EDT)''': I measured the average evaporation rate at 30°C to be similar (~0.5μL/min). However, there appears to be a fair bit of well to well variation in evaporation with different wells varying by as much as 15 μL after 4 hours at 30°C. | **'''[[User:Reshma P. Shetty|Reshma]] 21:09, 7 June 2007 (EDT)''': I measured the average evaporation rate at 30°C to be similar (~0.5μL/min for H<sub>2</sub>O). However, there appears to be a fair bit of well to well variation in evaporation with different wells varying by as much as 15 μL after 4 hours at 30°C. | ||
*The software will not allow you to dispense less than 5μl per step, so the minimal interval for adding water is ~10mins. | *The software will not allow you to dispense less than 5μl per step, so the minimal interval for adding water is ~10mins. | ||
| Line 21: | Line 21: | ||
*The software will ''try'' to prevent you from dispensing more than 250μl per well per experiment. This is because it thinks that any more will cause the wells on the plates we use to overflow. You can get around this by not selecting any wells to be measured when you save the protocol. This prevents the software from checking how much water you are going to dispense over the course of the experiment. So only choose the wells to be measured using the protocol wizard before starting your run | *The software will ''try'' to prevent you from dispensing more than 250μl per well per experiment. This is because it thinks that any more will cause the wells on the plates we use to overflow. You can get around this by not selecting any wells to be measured when you save the protocol. This prevents the software from checking how much water you are going to dispense over the course of the experiment. So only choose the wells to be measured using the protocol wizard before starting your run | ||
==Calculating time between dispensing steps== | |||
*To calculate the delay time between dispensing steps, it helps to know the time periods of other common steps during the run. | |||
**To read the absorbance and fluorescence of all 96 wells, it takes 2 mins. | |||
**To dispense 5μL in each of the 96 wells, it takes 4 mins. | |||
Latest revision as of 13:51, 17 June 2007
Also see: Victor3 plate reader
Source
- Rosenfeld et al. J. Mol. Biol. (2002) 323, 5, pp785-93.
Protocol
- Add an injection step into the Victor protocol to inject 12ul of DI water into each well every 25mins if doing an experiment. Or add water at any time interval that leads to a rate of .48ul/min.
- I believe this is a slightly faster rate of addition than used in the article above.
- Note: Check the water reservoir before beginning the protocol to ensure that there is sufficient water for the length of your protocol. 96 wells, measured over 24 hours, will require slightly more than 50 mL.
Notes
- This can keep well volume constant over a 10 hour protocol at 37°C.
- There may be some variability depending on machine model so it is best to check or experiment with this rate of water addition.
- I have not used the method at temperatures other than 37°C.
- Reshma 21:09, 7 June 2007 (EDT): I measured the average evaporation rate at 30°C to be similar (~0.5μL/min for H2O). However, there appears to be a fair bit of well to well variation in evaporation with different wells varying by as much as 15 μL after 4 hours at 30°C.
- The software will not allow you to dispense less than 5μl per step, so the minimal interval for adding water is ~10mins.
- Note that taking measurements (particularly several measurements over many wells) can take a significant amount of time, on the order of ~5mins. Adjust the shaking time or dispenser volume as needed.
- The software will try to prevent you from dispensing more than 250μl per well per experiment. This is because it thinks that any more will cause the wells on the plates we use to overflow. You can get around this by not selecting any wells to be measured when you save the protocol. This prevents the software from checking how much water you are going to dispense over the course of the experiment. So only choose the wells to be measured using the protocol wizard before starting your run
Calculating time between dispensing steps
- To calculate the delay time between dispensing steps, it helps to know the time periods of other common steps during the run.
- To read the absorbance and fluorescence of all 96 wells, it takes 2 mins.
- To dispense 5μL in each of the 96 wells, it takes 4 mins.
