Error Detection & Correction in Replicating Machines - Revision history

Austin J. Che: /* Participating Folks */

Austin J. Che — Tue, 22 May 2007 01:51:44 GMT

Participating Folks

←Older revision		Revision as of 01:51, 22 May 2007
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	*[[Gerry Sussman]]		*[[Gerry Sussman]]
	*[[Reshma Shetty]]		*[[Reshma Shetty]]
		+	*[[Julie Norville]]

	===Meeting Archive===		===Meeting Archive===

Endy: /* Proposed Assignments */

Endy — Sat, 31 Dec 2005 18:58:27 GMT

Proposed Assignments

←Older revision		Revision as of 18:58, 31 December 2005
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	##[http://www.nature.com/nature/journal/v431/n7007/abs/nature02833.html Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements]		##[http://www.nature.com/nature/journal/v431/n7007/abs/nature02833.html Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements]
	##[http://www.sciencemag.org/cgi/content/full/295/5562/2091 Reverse Transcriptase-Mediated Tropism Switching in Bordetella Bacteriophage]		##[http://www.sciencemag.org/cgi/content/full/295/5562/2091 Reverse Transcriptase-Mediated Tropism Switching in Bordetella Bacteriophage]
		+	##[http://www.nature.com/nature/journal/v438/n7065/abs/nature04114.html A mutation accumulation assay reveals a broad capacity for rapid evolution of gene expression]

	===Suggested Folks (not yet contacted/signed up)===		===Suggested Folks (not yet contacted/signed up)===

Endy at 03:58, 21 November 2005

Endy — Mon, 21 Nov 2005 03:58:13 GMT

←Older revision		Revision as of 03:58, 21 November 2005
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	*[http://www.cs.washington.edu/homes/weise/ Daniel Weise @ UW CS]		*[http://www.cs.washington.edu/homes/weise/ Daniel Weise @ UW CS]
	**[http://www.cs.washington.edu/homes/weise/590ce.html Dan's summary course]		**[http://www.cs.washington.edu/homes/weise/590ce.html Dan's summary course]
		+
		+	===Ideas & Links===
		+	*[[Codon_Optimized_for_Failure]]
		+	*[https://dspace.mit.edu/handle/1721.1/21169 Design and Evolution of Engineered Biological Systems]

Reshma P. Shetty: /* Participating Folks */

Reshma P. Shetty — Tue, 20 Sep 2005 23:03:59 GMT

Participating Folks

←Older revision		Revision as of 23:03, 20 September 2005
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	*[[User:labnoa\|Ania Labno]]		*[[User:labnoa\|Ania Labno]]
	*[[Gerry Sussman]]		*[[Gerry Sussman]]
		+	*[[Reshma Shetty]]

	===Meeting Archive===		===Meeting Archive===

Endy: /* Proposed Assignments */

Endy — Tue, 20 Sep 2005 20:32:09 GMT

Proposed Assignments

←Older revision		Revision as of 20:32, 20 September 2005
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	====Proposed Assignments====		====Proposed Assignments====
-	#Read/skim phage variation mechanism papers	+	#Read/skim phage variation mechanism papers (we need to decide if we want to explore these, [[User:Endy\|Endy]] 16:32, 20 Sep 2005 (EDT))
	##[http://www.nature.com/nsmb/journal/vaop/ncurrent/abs/nsmb992.html The C-type lectin fold as an evolutionary solution for massive sequence variation]		##[http://www.nature.com/nsmb/journal/vaop/ncurrent/abs/nsmb992.html The C-type lectin fold as an evolutionary solution for massive sequence variation]
	##[http://www.nature.com/nature/journal/v431/n7007/abs/nature02833.html Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements]		##[http://www.nature.com/nature/journal/v431/n7007/abs/nature02833.html Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements]

Endy: /* Next Meeting */

Endy — Tue, 20 Sep 2005 20:31:45 GMT

Next Meeting

←Older revision		Revision as of 20:31, 20 September 2005
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	===Next Meeting===		===Next Meeting===
	*'''PROPOSED''' TBA		*'''PROPOSED''' TBA
-	**OK	+	**nobody is yet OK
	**DE, JG, AL, [[User:Bcanton\|BC]], [[Jason Kelly\|JK]], AC, GJS and TK are pending		**DE, JG, AL, [[User:Bcanton\|BC]], [[Jason Kelly\|JK]], AC, GJS and TK are pending

Endy: /* Next Meeting */

Endy — Tue, 20 Sep 2005 20:28:02 GMT

Next Meeting

←Older revision		Revision as of 20:28, 20 September 2005
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	===Next Meeting===		===Next Meeting===
-	*'''PROPOSED''' ~~4-6p on Tuesday August 30 Room~~ TBA	+	*'''PROPOSED''' TBA
-	**DE, JG, AL, [[User:Bcanton\|BC]], [[Jason Kelly\|JK]], AC, GJS ~~are OK~~	+	**OK
-	**TK are pending	+	**DE, JG, AL, [[User:Bcanton\|BC]], [[Jason Kelly\|JK]], AC, GJS and TK are pending

-	====Assignments====	+	====Proposed Assignments====
-	#Read/skim ~~Haussler~~ papers	+	#Read/skim phage variation mechanism papers
-	##[http://www.~~sciencemag~~.~~org~~/~~cgi~~/~~content~~/~~full~~/~~304~~/~~5675~~/~~1321 Ultraconserved Elements in the Human Genome~~]	+	##[http://www.nature.com/nsmb/journal/vaop/ncurrent/abs/nsmb992.html The C-type lectin fold as an evolutionary solution for massive sequence variation]
-	##[http://www.~~genome~~.~~org~~/~~cgi~~/~~content~~/~~full~~/15/8/~~1034 Evolutionarily conserved elements~~ in ~~vertebrate, insect, worm, and yeast genomes~~]	+	##[http://www.nature.com/nature/journal/v431/n7007/abs/nature02833.html Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements]
-	#~~Read/skim Kelly thesis proposal~~	+	##[http://www.sciencemag.org/cgi/content/full/295/5562/2091 Reverse Transcriptase-Mediated Tropism Switching in Bordetella Bacteriophage]
-	#~~#Entire proposal~~ [http://~~hdl~~.~~handle~~.~~net~~/~~1721.1~~/~~21169 here], relevant sections are 3.5 and 4.3.~~	+
-	~~##Also, in wiki format and slightly updated [[Evolutionary Stability\|here]].~~	+
-	~~#Read~~/~~skim Alon paper~~	+
-	~~##[http:~~//~~www.ncbi.nlm.nih.gov~~/~~entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16049495&query_hl=1 Optimality and evolutionary tuning of the expression level of a protein~~]	+

	===Suggested Folks (not yet contacted/signed up)===		===Suggested Folks (not yet contacted/signed up)===

Endy: /* Meeting Archive */

Endy — Tue, 20 Sep 2005 20:23:13 GMT

Meeting Archive

←Older revision		Revision as of 20:23, 20 September 2005
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	===Meeting Archive===		===Meeting Archive===
	*[[RWE072605]]		*[[RWE072605]]
		+	*[[RWE083005]]

	===Next Meeting===		===Next Meeting===

Skosuri: /* Assignments */

Skosuri — Wed, 31 Aug 2005 07:20:18 GMT

Assignments

←Older revision		Revision as of 07:20, 31 August 2005
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	##[http://www.sciencemag.org/cgi/content/full/304/5675/1321 Ultraconserved Elements in the Human Genome]		##[http://www.sciencemag.org/cgi/content/full/304/5675/1321 Ultraconserved Elements in the Human Genome]
	##[http://www.genome.org/cgi/content/full/15/8/1034 Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes]		##[http://www.genome.org/cgi/content/full/15/8/1034 Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes]
-
	#Read/skim Kelly thesis proposal		#Read/skim Kelly thesis proposal
	##Entire proposal [http://hdl.handle.net/1721.1/21169 here], relevant sections are 3.5 and 4.3.		##Entire proposal [http://hdl.handle.net/1721.1/21169 here], relevant sections are 3.5 and 4.3.
	##Also, in wiki format and slightly updated [[Evolutionary Stability\|here]].		##Also, in wiki format and slightly updated [[Evolutionary Stability\|here]].
-
	#Read/skim Alon paper		#Read/skim Alon paper
	##[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16049495&query_hl=1 Optimality and evolutionary tuning of the expression level of a protein]		##[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16049495&query_hl=1 Optimality and evolutionary tuning of the expression level of a protein]

Skosuri: /* Suggested Folks (not yet contacted/signed up) */

Skosuri — Wed, 31 Aug 2005 07:19:13 GMT

Suggested Folks (not yet contacted/signed up)

←Older revision		Revision as of 07:19, 31 August 2005
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	===Suggested Folks (not yet contacted/signed up)===		===Suggested Folks (not yet contacted/signed up)===
		+	*Eric Alm
	*Norm Margolus		*Norm Margolus
	*Jonathan Rees		*Jonathan Rees
		+	*[http://www.cs.washington.edu/homes/weise/ Daniel Weise]

	===Background Reading & External Links===		===Background Reading & External Links===