Escherichia coli/Codon usage: Difference between revisions
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Source: This is reformatted from http://www.kazusa.or.jp/codon/. | Source: This is reformatted from http://www.kazusa.or.jp/codon/. | ||
Note that their numbers have changed so they no longer match up exactly. | Note that their numbers have changed so they no longer match up exactly. (8/15/2012) | ||
Escherichia coli K12 [gbbct]: 5054 CDS's (1603901 codons) | Escherichia coli K12 [gbbct]: 5054 CDS's (1603901 codons) | ||
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|[[Tryptophan]]||TGG||24553.00||15.31||1.00 | |[[Tryptophan]]||TGG||24553.00||15.31||1.00 | ||
|- | |- | ||
|[[Cysteine]]||TGT||8306.00||5.18||0.45 | |[[Cysteine]]||TGT||8306.00||5.18||0.45 | ||
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|- | |- | ||
|Stop||TAA||3244.00||2.02||0.64 | |Stop||TAA||3244.00||2.02||0.64 | ||
|- | |||
|Stop||TGA||1448.00||0.90||0.29 | |||
|- | |- | ||
|[[Tyrosine]]||TAT||26180.00||16.32||0.57 | |[[Tyrosine]]||TAT||26180.00||16.32||0.57 | ||
Revision as of 10:34, 17 August 2012
Source: This is reformatted from http://www.kazusa.or.jp/codon/. Note that their numbers have changed so they no longer match up exactly. (8/15/2012)
Escherichia coli K12 [gbbct]: 5054 CDS's (1603901 codons)
| Amino Acid | Codon | Total number | #/1000 | Fraction |
|---|---|---|---|---|
| Glycine | GGG | 17628.00 | 10.99 | 0.15 |
| Glycine | GGA | 12696.00 | 7.92 | 0.11 |
| Glycine | GGT | 39862.00 | 24.85 | 0.34 |
| Glycine | GGC | 47212.00 | 29.44 | 0.40 |
| Glutamate | GAG | 28529.00 | 17.79 | 0.31 |
| Glutamate | GAA | 63484.00 | 39.58 | 0.69 |
| Aspartate | GAT | 51670.00 | 32.22 | 0.63 |
| Aspartate | GAC | 30559.00 | 19.05 | 0.37 |
| Valine | GTG | 42097.00 | 26.25 | 0.37 |
| Valine | GTA | 17443.00 | 10.88 | 0.15 |
| Valine | GTT | 29487.00 | 18.38 | 0.26 |
| Valine | GTC | 24406.00 | 15.22 | 0.22 |
| Alanine | GCG | 53984.00 | 33.66 | 0.36 |
| Alanine | GCA | 32529.00 | 20.28 | 0.21 |
| Alanine | GCT | 24609.00 | 15.34 | 0.16 |
| Alanine | GCC | 40914.00 | 25.51 | 0.27 |
| Arginine | AGG | 1949.00 | 1.22 | 0.02 |
| Arginine | AGA | 3291.00 | 2.05 | 0.04 |
| Arginine | CGG | 8631.00 | 5.38 | 0.10 |
| Arginine | CGA | 5668.00 | 3.53 | 0.06 |
| Arginine | CGT | 33711.00 | 21.02 | 0.38 |
| Arginine | CGC | 35311.00 | 22.02 | 0.40 |
| Lysine | AAG | 16370.00 | 10.21 | 0.23 |
| Lysine | AAA | 53920.00 | 33.62 | 0.77 |
| Asparagine | AAT | 28256.00 | 17.62 | 0.45 |
| Asparagine | AAC | 34752.00 | 21.67 | 0.55 |
| Methionine | ATG | 44539.00 | 27.77 | 1.00 |
| Isoleucine | ATA | 6866.00 | 4.28 | 0.07 |
| Isoleucine | ATT | 48766.00 | 30.40 | 0.51 |
| Isoleucine | ATC | 40097.00 | 25.00 | 0.42 |
| Threonine | ACG | 23056.00 | 14.37 | 0.27 |
| Threonine | ACA | 11267.00 | 7.02 | 0.13 |
| Threonine | ACT | 14303.00 | 8.92 | 0.17 |
| Threonine | ACC | 37495.00 | 23.38 | 0.44 |
| Tryptophan | TGG | 24553.00 | 15.31 | 1.00 |
| Cysteine | TGT | 8306.00 | 5.18 | 0.45 |
| Cysteine | TGC | 10330.00 | 6.44 | 0.55 |
| Stop | TAG | 365.00 | 0.23 | 0.07 |
| Stop | TAA | 3244.00 | 2.02 | 0.64 |
| Stop | TGA | 1448.00 | 0.90 | 0.29 |
| Tyrosine | TAT | 26180.00 | 16.32 | 0.57 |
| Tyrosine | TAC | 19675.00 | 12.27 | 0.43 |
| Phenylalanine | TTT | 35930.00 | 22.40 | 0.57 |
| Phenylalanine | TTC | 26609.00 | 16.59 | 0.43 |
| Serine | AGT | 13976.00 | 8.71 | 0.15 |
| Serine | AGC | 25716.00 | 16.03 | 0.28 |
| Serine | TCG | 14305.00 | 8.92 | 0.15 |
| Serine | TCA | 11438.00 | 7.13 | 0.12 |
| Serine | TCT | 13633.00 | 8.50 | 0.15 |
| Serine | TCC | 13783.00 | 8.59 | 0.15 |
| Glutamine | CAG | 46256.00 | 28.84 | 0.65 |
| Glutamine | CAA | 24787.00 | 15.45 | 0.35 |
| Histadine | CAT | 20686.00 | 12.90 | 0.57 |
| Histadine | CAC | 15595.00 | 9.72 | 0.43 |
| Leucine | TTG | 22000.00 | 13.72 | 0.13 |
| Leucine | TTA | 22279.00 | 13.89 | 0.13 |
| Leucine | CTG | 84714.00 | 52.82 | 0.50 |
| Leucine | CTA | 6182.00 | 3.85 | 0.04 |
| Leucine | CTT | 17707.00 | 11.04 | 0.10 |
| Leucine | CTC | 17715.00 | 11.04 | 0.10 |
| Proline | CCG | 37316.00 | 23.27 | 0.52 |
| Proline | CCA | 13664.00 | 8.52 | 0.19 |
| Proline | CCT | 11291.00 | 7.04 | 0.16 |
| Proline | CCC | 8861.00 | 5.52 | 0.12 |
