Ethanol precipitation of nucleic acids

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Mix and freeze overnight in -20. This step some say is unnecessary but others swear by. If you are in a rush you can also put it in the -80 for a few hours.
Mix and freeze overnight in -20. This step some say is unnecessary but others swear by. If you are in a rush you can also put it in the -80 for a few hours.
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*In general, the time you need to incubate in the freezer depends on how much nucleic acid you have and how big it is. My general protocol  is to freeze for 20 min to 1 hr at -80 ˚C. This seems to work well for most things, but you may want to freeze longer if you have only a small concentration of nucleic acid or if it is small in size(<15 nucleotides).--[[User:Kathmc|Kathleen]]
Spin at 13000 RPM, 4 degrees for 30 minutes on your benchtop centrifuge. Make sure to mark the outermost edge of the tube so you can find the pellet easily. It is clear and usually looks like a little smudge on the tube.
Spin at 13000 RPM, 4 degrees for 30 minutes on your benchtop centrifuge. Make sure to mark the outermost edge of the tube so you can find the pellet easily. It is clear and usually looks like a little smudge on the tube.
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Add your desired quantity of water. Vortex and spin down to resuspend.
Add your desired quantity of water. Vortex and spin down to resuspend.
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*Beware of using water unless you are sure of what you are getting in to. The pH of water can vary widely (I've seen from pH 5 to pH 8.5), and depurination of DNA at low pH or degradation of RNA at high pH are possibilities. Water also typically contains trace metals, which can accelerate these reactions. I typically recommend resuspension in TE (10 mM Tris-HCl, pH 7.5, 1 mM EDTA). This makes sure your nucleic acid is at a neutral pH and the EDTA will chelate any trace metals. Since they are in such small amounts, neither the buffer nor the EDTA will effect most downstream reactions.--[[User:Kathmc|Kathleen]]

Revision as of 17:27, 13 September 2005

To your sample add

    3 volumes of 100% Ethanol
    1/10 volume of 3M sodium acetate

Mix and freeze overnight in -20. This step some say is unnecessary but others swear by. If you are in a rush you can also put it in the -80 for a few hours.

  • In general, the time you need to incubate in the freezer depends on how much nucleic acid you have and how big it is. My general protocol is to freeze for 20 min to 1 hr at -80 ˚C. This seems to work well for most things, but you may want to freeze longer if you have only a small concentration of nucleic acid or if it is small in size(<15 nucleotides).--Kathleen

Spin at 13000 RPM, 4 degrees for 30 minutes on your benchtop centrifuge. Make sure to mark the outermost edge of the tube so you can find the pellet easily. It is clear and usually looks like a little smudge on the tube.

Decant the supernatant.

Add your desired quantity of water. Vortex and spin down to resuspend.

  • Beware of using water unless you are sure of what you are getting in to. The pH of water can vary widely (I've seen from pH 5 to pH 8.5), and depurination of DNA at low pH or degradation of RNA at high pH are possibilities. Water also typically contains trace metals, which can accelerate these reactions. I typically recommend resuspension in TE (10 mM Tris-HCl, pH 7.5, 1 mM EDTA). This makes sure your nucleic acid is at a neutral pH and the EDTA will chelate any trace metals. Since they are in such small amounts, neither the buffer nor the EDTA will effect most downstream reactions.--Kathleen
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