FCCT Biochemistry Lab:Reprints: Difference between revisions

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== 2008 ==
== 2008 ==
Novinec M., Kovačič L., '''Škrlj N.''', Turk V., '''Lenarčič B.''' Recombinant human SMOCs produced by ''in vitro'' refolding: calcium-binding properties and interactions with serum proteins. [http://dx.doi.org/10.1016/j.pep.2008.07.009 Prot. Expr. Purif.] - in press
*Bubik A., Sedmak B., Novinec M., '''Lenarčič B.''', Lah T.T. Cytotoxic and peptidase inhibitory activities of selected non-hepatotoxic cyclic peptides from cyanobacteria. Biol. Chem. 389(10), 1339-1346 [http://doi:10.1515/BC.2008.153 DOI]


Aguiar R.S., '''Lovšin N.''', Tanuri A., Peterlin B.M. VPR.A3A chimera inhibits HIV replication. J. Biol. Chem. 283 (5), 2518-2525 [http://www.jbc.org/cgi/content/full/283/5/2518 JBC-online]
*Novinec M., Kovačič L., '''Škrlj N.''', Turk V., '''Lenarčič B.''' Recombinant human SMOCs produced by ''in vitro'' refolding: calcium-binding properties and interactions with serum proteins. Prot. Expr. Purif. 62(1), 75-82 [http://dx.doi.org/10.1016/j.pep.2008.07.009 DOI]  


Lah J., Drobnak I., '''Dolinar M.''', Vesnaver G. (2008) What drives the binding of minor groove-directed ligands to DNA hairpins? Nucl. Acids Res. 36 (3), 897-904. [http://nar.oxfordjournals.org/cgi/content/full/36/3/897 Open Access]
*Aguiar R.S., '''Lovšin N.''', Tanuri A., Peterlin B.M. VPR.A3A chimera inhibits HIV replication. J. Biol. Chem. 283 (5), 2518-2525 [http://www.jbc.org/cgi/content/full/283/5/2518 JBC-online]
 
*'''Pavšič M.''', Turk V., '''Lenarčič B.''' Purification and characterization of a recombinant human testican-2 expressed in baculovirus-infected Sf9 insect cells. Prot. Expr. Purif. 58(1) 132-139 [http://doi:10.1016/j.pep.2007.09.010 DOI]
 
*Lah J., Drobnak I., '''Dolinar M.''', Vesnaver G. (2008) What drives the binding of minor groove-directed ligands to DNA hairpins? Nucl. Acids Res. 36 (3), 897-904. [http://nar.oxfordjournals.org/cgi/content/full/36/3/897 Open Access]


== 2007 ==
== 2007 ==
Ciglič M., Fekonja O., Kovač J., Oblak A., Pohar J., Skočaj M., Tkavc R., Benčina M., Panter G., Manček Keber M., '''Dolinar M.''', Jerala R. (2007) Engineered human cells: say no to sepsis. IET Synth. Biol. 1(1-2), 13-16. [http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=ISBEBU0000010001-2000013000001&idtype=cvips&gifs=Yes IET Digital Library]  
*Ciglič M., Fekonja O., Kovač J., Oblak A., Pohar J., Skočaj M., Tkavc R., Benčina M., Panter G., Manček Keber M., '''Dolinar M.''', Jerala R. (2007) Engineered human cells: say no to sepsis. IET Synth. Biol. 1(1-2), 13-16. [http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=ISBEBU0000010001-2000013000001&idtype=cvips&gifs=Yes IET Digital Library]  


Novinec M., Grass R.N., Stark W.J., Turk V., Baici A., '''Lenarčič B.''' (2007) Interaction between human cathepsins K, L, and S and elastins. J. Biol. Chem. 282 (11), 7893-7902. [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17227755&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PubMed]
*Novinec M., Grass R.N., Stark W.J., Turk V., Baici A., '''Lenarčič B.''' (2007) Interaction between human cathepsins K, L, and S and elastins. J. Biol. Chem. 282 (11), 7893-7902. [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17227755&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PubMed]


Okeoma C.M., '''Lovšin N.''', Peterlin B.M., Ross S.R. (2007) APOBEC3 inhibits mouse mammary tumour virus replication ''in vivo''. Nature 445, 927-930. [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17259974&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PubMed]
*Okeoma C.M., '''Lovšin N.''', Peterlin B.M., Ross S.R. (2007) APOBEC3 inhibits mouse mammary tumour virus replication ''in vivo''. Nature 445, 927-930. [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17259974&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PubMed]


Jevševar S., '''Palčič J.''', Jalen Š., Pavko A. (2007) Influence of the media composition on behavior of pET expression systems. Acta Chim. Slov. 54, 360-365 [[http://acta.chem-soc.si/54/54-2-360.pdf free access]]
*Jevševar S., '''Palčič J.''', Jalen Š., Pavko A. (2007) Influence of the media composition on behavior of pET expression systems. Acta Chim. Slov. 54, 360-365 [[http://acta.chem-soc.si/54/54-2-360.pdf free access]]


== 2006 ==
== 2006 ==
Kosec G., Alvarez V., Agüero F., Sanchez D., '''Dolinar M.''', Turk B., Turk V., Cazzulo J.J. (2006) Metacaspases of ''Trypanosoma cruzi'': possible candidates for programmed cell death mediators. Mol. Biochem. Parasitol. 145, 18-28. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16213036&query_hl=13&itool=pubmed_docsum PubMed]
*Kosec G., Alvarez V., Agüero F., Sanchez D., '''Dolinar M.''', Turk B., Turk V., Cazzulo J.J. (2006) Metacaspases of ''Trypanosoma cruzi'': possible candidates for programmed cell death mediators. Mol. Biochem. Parasitol. 145, 18-28. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16213036&query_hl=13&itool=pubmed_docsum PubMed]


Novinec M., Kordiš D., Turk V., '''Lenarčič B.''' (2006) Diversity and evolution of the thyroglobulin type-1 domain superfamily. Mol. Biol. Evol. 23(4),744-755. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16368776&query_hl=7&itool=pubmed_docsum PubMed]
*Novinec M., Kordiš D., Turk V., '''Lenarčič B.''' (2006) Diversity and evolution of the thyroglobulin type-1 domain superfamily. Mol. Biol. Evol. 23(4),744-755. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16368776&query_hl=7&itool=pubmed_docsum PubMed]


'''Prijatelj P.''', Charnay M., Ivanovski G., Jenko Z., Pungercar J., Krizaj I., Faure G. (2006) The C-terminal and beta-wing regions of ammodytoxin A, a neurotoxic phospholipase A2 from ''Vipera ammodytes ammodytes'', are critical for binding to factor Xa and for anticoagulant effect. Biochimie 88(1), 69-76. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16039772&query_hl=2&itool=pubmed_docsum PubMed]
*'''Prijatelj P.''', Charnay M., Ivanovski G., Jenko Z., Pungercar J., Krizaj I., Faure G. (2006) The C-terminal and beta-wing regions of ammodytoxin A, a neurotoxic phospholipase A2 from ''Vipera ammodytes ammodytes'', are critical for binding to factor Xa and for anticoagulant effect. Biochimie 88(1), 69-76. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16039772&query_hl=2&itool=pubmed_docsum PubMed]


'''Prijatelj P.''', Vardjan N., Rowan E.G., Križaj I., Pungerčar J. (2006) Binding to the high-affinity M-type receptor for secreted phospholipases A(2) is not obligatory for the presynaptic neurotoxicity of ammodytoxin A. Biochimie 88(10), 1425-1433. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=16815622&query_hl=2&itool=pubmed_docsum PubMed]
*'''Prijatelj P.''', Vardjan N., Rowan E.G., Križaj I., Pungerčar J. (2006) Binding to the high-affinity M-type receptor for secreted phospholipases A(2) is not obligatory for the presynaptic neurotoxicity of ammodytoxin A. Biochimie 88(10), 1425-1433. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=16815622&query_hl=2&itool=pubmed_docsum PubMed]


== 2005 ==
== 2005 ==
Fontana L., Chen Y., '''Prijatelj P.''', Sakai T., Fassler R., Sakai L.Y., Rifkin D.B. (2005) Fibronectin is required for integrin alpha vbeta6-mediated activation of latent TGF-beta complexes containing LTBP-1. FASEB J. 19(13), 1798-808. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16260650&query_hl=2&itool=pubmed_docsum PubMed]
*Fontana L., Chen Y., '''Prijatelj P.''', Sakai T., Fassler R., Sakai L.Y., Rifkin D.B. (2005) Fibronectin is required for integrin alpha vbeta6-mediated activation of latent TGF-beta complexes containing LTBP-1. FASEB J. 19(13), 1798-808. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16260650&query_hl=2&itool=pubmed_docsum PubMed]


Grujić M., Zavašnik-Bergant T., Pejler G., '''Renko M.''' (2005) Actinonin induces apoptosis in U937 leukemia cells. Cancer Lett. 223, 211-218. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15896455&query_hl=10&itool=pubmed_docsum PubMed]
*Grujić M., Zavašnik-Bergant T., Pejler G., '''Renko M.''' (2005) Actinonin induces apoptosis in U937 leukemia cells. Cancer Lett. 223, 211-218. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15896455&query_hl=10&itool=pubmed_docsum PubMed]


Meh P., Pavšič M., Turk V., Baici A., '''Lenarčič B.''' (2005) Dual concentration-dependent activity of thyroglobulin type-1 domain of testican: specific inhibitor and substrate of cathepsin L. Biol. Chem. 386, 75-83. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15843150&query_hl=7&itool=pubmed_docsum PubMed]
*Meh P., Pavšič M., Turk V., Baici A., '''Lenarčič B.''' (2005) Dual concentration-dependent activity of thyroglobulin type-1 domain of testican: specific inhibitor and substrate of cathepsin L. Biol. Chem. 386, 75-83. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15843150&query_hl=7&itool=pubmed_docsum PubMed]


Vasiljeva O., '''Dolinar M.''', Rozman Pungerčar J., Turk V., Turk B. (2005) Recombinant human procathepsin S is capable of autocatalytic processing at neutral pH in the presence of glycosaminoglycans. FEBS Lett. 579, 1285-1290. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15710427&query_hl=13&itool=pubmed_docsum PubMed]
*Vasiljeva O., '''Dolinar M.''', Rozman Pungerčar J., Turk V., Turk B. (2005) Recombinant human procathepsin S is capable of autocatalytic processing at neutral pH in the presence of glycosaminoglycans. FEBS Lett. 579, 1285-1290. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15710427&query_hl=13&itool=pubmed_docsum PubMed]


Zheng Y.H., '''Lovšin N.''', Peterlin B.M. (2005) Newly identified host factors modulate HIV replication. Immunol Lett. 97(2), 225-34. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15752562&query_hl=5&itool=pubmed_docsum PubMed]
*Zheng Y.H., '''Lovšin N.''', Peterlin B.M. (2005) Newly identified host factors modulate HIV replication. Immunol Lett. 97(2), 225-34. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15752562&query_hl=5&itool=pubmed_docsum PubMed]




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Revision as of 07:42, 23 October 2008

This is the list of recent publications of our group members with links to summaries or full texts.

2008

  • Bubik A., Sedmak B., Novinec M., Lenarčič B., Lah T.T. Cytotoxic and peptidase inhibitory activities of selected non-hepatotoxic cyclic peptides from cyanobacteria. Biol. Chem. 389(10), 1339-1346 DOI
  • Novinec M., Kovačič L., Škrlj N., Turk V., Lenarčič B. Recombinant human SMOCs produced by in vitro refolding: calcium-binding properties and interactions with serum proteins. Prot. Expr. Purif. 62(1), 75-82 DOI
  • Aguiar R.S., Lovšin N., Tanuri A., Peterlin B.M. VPR.A3A chimera inhibits HIV replication. J. Biol. Chem. 283 (5), 2518-2525 JBC-online
  • Pavšič M., Turk V., Lenarčič B. Purification and characterization of a recombinant human testican-2 expressed in baculovirus-infected Sf9 insect cells. Prot. Expr. Purif. 58(1) 132-139 DOI
  • Lah J., Drobnak I., Dolinar M., Vesnaver G. (2008) What drives the binding of minor groove-directed ligands to DNA hairpins? Nucl. Acids Res. 36 (3), 897-904. Open Access

2007

  • Ciglič M., Fekonja O., Kovač J., Oblak A., Pohar J., Skočaj M., Tkavc R., Benčina M., Panter G., Manček Keber M., Dolinar M., Jerala R. (2007) Engineered human cells: say no to sepsis. IET Synth. Biol. 1(1-2), 13-16. IET Digital Library
  • Novinec M., Grass R.N., Stark W.J., Turk V., Baici A., Lenarčič B. (2007) Interaction between human cathepsins K, L, and S and elastins. J. Biol. Chem. 282 (11), 7893-7902. PubMed
  • Okeoma C.M., Lovšin N., Peterlin B.M., Ross S.R. (2007) APOBEC3 inhibits mouse mammary tumour virus replication in vivo. Nature 445, 927-930. PubMed
  • Jevševar S., Palčič J., Jalen Š., Pavko A. (2007) Influence of the media composition on behavior of pET expression systems. Acta Chim. Slov. 54, 360-365 [free access]

2006

  • Kosec G., Alvarez V., Agüero F., Sanchez D., Dolinar M., Turk B., Turk V., Cazzulo J.J. (2006) Metacaspases of Trypanosoma cruzi: possible candidates for programmed cell death mediators. Mol. Biochem. Parasitol. 145, 18-28. PubMed
  • Novinec M., Kordiš D., Turk V., Lenarčič B. (2006) Diversity and evolution of the thyroglobulin type-1 domain superfamily. Mol. Biol. Evol. 23(4),744-755. PubMed
  • Prijatelj P., Charnay M., Ivanovski G., Jenko Z., Pungercar J., Krizaj I., Faure G. (2006) The C-terminal and beta-wing regions of ammodytoxin A, a neurotoxic phospholipase A2 from Vipera ammodytes ammodytes, are critical for binding to factor Xa and for anticoagulant effect. Biochimie 88(1), 69-76. PubMed
  • Prijatelj P., Vardjan N., Rowan E.G., Križaj I., Pungerčar J. (2006) Binding to the high-affinity M-type receptor for secreted phospholipases A(2) is not obligatory for the presynaptic neurotoxicity of ammodytoxin A. Biochimie 88(10), 1425-1433. PubMed

2005

  • Fontana L., Chen Y., Prijatelj P., Sakai T., Fassler R., Sakai L.Y., Rifkin D.B. (2005) Fibronectin is required for integrin alpha vbeta6-mediated activation of latent TGF-beta complexes containing LTBP-1. FASEB J. 19(13), 1798-808. PubMed
  • Grujić M., Zavašnik-Bergant T., Pejler G., Renko M. (2005) Actinonin induces apoptosis in U937 leukemia cells. Cancer Lett. 223, 211-218. PubMed
  • Meh P., Pavšič M., Turk V., Baici A., Lenarčič B. (2005) Dual concentration-dependent activity of thyroglobulin type-1 domain of testican: specific inhibitor and substrate of cathepsin L. Biol. Chem. 386, 75-83. PubMed
  • Vasiljeva O., Dolinar M., Rozman Pungerčar J., Turk V., Turk B. (2005) Recombinant human procathepsin S is capable of autocatalytic processing at neutral pH in the presence of glycosaminoglycans. FEBS Lett. 579, 1285-1290. PubMed
  • Zheng Y.H., Lovšin N., Peterlin B.M. (2005) Newly identified host factors modulate HIV replication. Immunol Lett. 97(2), 225-34. PubMed


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