FCCT Biochemistry Lab:Reprints

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== 2009 ==
== 2009 ==
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*Low A., Okeoma C.M., '''Lovšin N.''', de Las Heras M., Taylor T.H.,Peterlin BM. Ross S.R., Fan H. (2009) Enhanced replication and pathogenesis of Moloney murine leukemia virus in mice defective in the murine APOBEC3 gene. Virology - in press. [http://dx.doi.org/10.1016/j.virol.2008.11.051 DOI]  
+
*Low A., Okeoma C.M., '''Lovšin N.''', de Las Heras M., Taylor T.H., Peterlin B.M., Ross S.R., Fan H. (2009) Enhanced replication and pathogenesis of Moloney murine leukemia virus in mice defective in the murine APOBEC3 gene. Virology 385(2), 455-463. [http://dx.doi.org/10.1016/j.virol.2008.11.051 DOI]  
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*Pungerčar J.R., Caglić D., Sajid M., '''Dolinar M.''', Vasiljeva O., Požgan U., Turk D., Bogyo M., Turk V., Turk B. (2009) Autocatalytic processing of procathepsin B is triggered by proenzyme activity. FEBS J. 276(3), 660-668 [http://dx.doi.org/10.1111/j.1742-4658.2008.06815.x  DOI]
+
 
 +
*Pungerčar J.R., Caglić D., Sajid M., '''Dolinar M.''', Vasiljeva O., Požgan U., Turk D., Bogyo M., Turk V., Turk B. (2009) Autocatalytic processing of procathepsin B is triggered by proenzyme activity. FEBS J. 276(3), 660-668. [http://dx.doi.org/10.1111/j.1742-4658.2008.06815.x  DOI]
*'''Škrlj N., Erčulj N., Dolinar M.''' (2009) A versatile bacterial expression vector based on the synthetic biology plasmid pSB1. Prot. Expr. Purif. 64, 198-204 [http://dx.doi.org/10.1016/j.pep.2008.10.019 DOI]
*'''Škrlj N., Erčulj N., Dolinar M.''' (2009) A versatile bacterial expression vector based on the synthetic biology plasmid pSB1. Prot. Expr. Purif. 64, 198-204 [http://dx.doi.org/10.1016/j.pep.2008.10.019 DOI]
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*'''Škrlj N.,''' Čurin Šerbec V., '''Dolinar M.''' (2009) Single-chain Fv antibody fragments retain binding properties of the monoclonal antibody raised against peptide P1 of the human prion protein. Appl. Biochem. Biotechnol. - published online July 14 [http://dx.doi.org/10.1007/s12010-009-8699-4 DOI]
+
 
 +
*'''Škrlj N.,''' Čurin Šerbec V., '''Dolinar M.''' (2009) Single-chain Fv antibody fragments retain binding properties of the monoclonal antibody raised against peptide P1 of the human prion protein. Appl. Biochem. Biotechnol. - published online July 14. [http://dx.doi.org/10.1007/s12010-009-8699-4 DOI]
== 2008 ==
== 2008 ==
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*Yoshinaga K., Obata H., Jurukovski V., Mazzieri R., Chen Y., Zilberberg L., Huso D., Melamed J., '''Prijatelj P.''', Todorovic V., Dabovic B., Rifkin D.B. (2008) Perturbation of transforming growth factor (TGF)-beta1 association with latent TGF-beta binding protein yields inflammation and tumors. Proc. Natl. Acad. Sci. USA 105(48), 18758-18763 [http://dx.doi.org/10.1073/pnas.0805411105 DOI]
+
*Yoshinaga K., Obata H., Jurukovski V., Mazzieri R., Chen Y., Zilberberg L., Huso D., Melamed J., '''Prijatelj P.''', Todorovic V., Dabovic B., Rifkin D.B. (2008) Perturbation of transforming growth factor (TGF)-beta1 association with latent TGF-beta binding protein yields inflammation and tumors. Proc. Natl. Acad. Sci. USA 105(48), 18758-18763. [http://dx.doi.org/10.1073/pnas.0805411105 DOI]
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*Halassy B., Habjanec L., Brgles M., Balija M.L., Leonardi A., Kovačič L., '''Prijatelj P.''', Tomasić J., Križaj I. (2008) The role of antibodies specific for toxic sPLA2s and haemorrhagins in neutralizing potential of antisera raised against ''Vipera ammodytes ammodytes'' venom. Compar. Biochem. Physiol.  C: Toxicol. Pharmacol. 148 (2), 178-183 [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6W89-4SHVSXJ-1&_user=4776866&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000033658&_version=1&_urlVersion=0&_userid=4776866&md5=a416ea065a45ca91250aa9e887a81a68 ScienceDirect]  
+
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*'''Prijatelj P.''', Jenko Pražnikar Z., Petan T., Križaj I., Pungerčar J. (2008) Mapping the structural determinants of presynaptic neurotoxicity of snake venom phospholipases A2. Toxicon 51(8) 1520-1529 [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TCS-4S6P1X9-2&_user=4776866&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000033658&_version=1&_urlVersion=0&_userid=4776866&md5=17cae91a60e2cdeee2786b6e8dfd0460 ScienceDirect]
+
*Halassy B., Habjanec L., Brgles M., Balija M.L., Leonardi A., Kovačič L., '''Prijatelj P.''', Tomasić J., Križaj I. (2008) The role of antibodies specific for toxic sPLA2s and haemorrhagins in neutralizing potential of antisera raised against ''Vipera ammodytes ammodytes'' venom. Compar. Biochem. Physiol.  C: Toxicol. Pharmacol. 148 (2), 178-183. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6W89-4SHVSXJ-1&_user=4776866&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000033658&_version=1&_urlVersion=0&_userid=4776866&md5=a416ea065a45ca91250aa9e887a81a68 ScienceDirect]  
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*Bubik A., Sedmak B., Novinec M., '''Lenarčič B.''', Lah T.T. (2008) Cytotoxic and peptidase inhibitory activities of selected non-hepatotoxic cyclic peptides from cyanobacteria. Biol. Chem. 389(10), 1339-1346 [http://dx.doi.org/10.1515/BC.2008.153 DOI]
+
*'''Prijatelj P.''', Jenko Pražnikar Z., Petan T., Križaj I., Pungerčar J. (2008) Mapping the structural determinants of presynaptic neurotoxicity of snake venom phospholipases A2. Toxicon 51(8) 1520-1529. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TCS-4S6P1X9-2&_user=4776866&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000033658&_version=1&_urlVersion=0&_userid=4776866&md5=17cae91a60e2cdeee2786b6e8dfd0460 ScienceDirect]
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*Novinec M., Kovačič L., '''Škrlj N.''', Turk V., '''Lenarčič B.''' (2008) Recombinant human SMOCs produced by ''in vitro'' refolding: calcium-binding properties and interactions with serum proteins. Prot. Expr. Purif. 62(1), 75-82 [http://dx.doi.org/10.1016/j.pep.2008.07.009 DOI]  
+
*Bubik A., Sedmak B., Novinec M., '''Lenarčič B.''', Lah T.T. (2008) Cytotoxic and peptidase inhibitory activities of selected non-hepatotoxic cyclic peptides from cyanobacteria. Biol. Chem. 389(10), 1339-1346. [http://dx.doi.org/10.1515/BC.2008.153 DOI]
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*Aguiar R.S., '''Lovšin N.''', Tanuri A., Peterlin B.M. (2008) VPR.A3A chimera inhibits HIV replication. J. Biol. Chem. 283 (5), 2518-2525 [http://www.jbc.org/cgi/content/full/283/5/2518 JBC-online]
+
*Novinec M., Kovačič L., '''Škrlj N.''', Turk V., '''Lenarčič B.''' (2008) Recombinant human SMOCs produced by ''in vitro'' refolding: calcium-binding properties and interactions with serum proteins. Prot. Expr. Purif. 62(1), 75-82. [http://dx.doi.org/10.1016/j.pep.2008.07.009 DOI]
 +
*Aguiar R.S., '''Lovšin N.''', Tanuri A., Peterlin B.M. (2008) VPR.A3A chimera inhibits HIV replication. J. Biol. Chem. 283 (5), 2518-2525. [http://www.jbc.org/cgi/content/full/283/5/2518 JBC-online]
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*'''Pavšič M.''', Turk V., '''Lenarčič B.''' (2008) Purification and characterization of a recombinant human testican-2 expressed in baculovirus-infected Sf9 insect cells. Prot. Expr. Purif. 58(1) 132-139 [http://dx.doi.org/10.1016/j.pep.2007.09.010 DOI]
+
*'''Pavšič M.''', Turk V., '''Lenarčič B.''' (2008) Purification and characterization of a recombinant human testican-2 expressed in baculovirus-infected Sf9 insect cells. Prot. Expr. Purif. 58(1) 132-139. [http://dx.doi.org/10.1016/j.pep.2007.09.010 DOI]
*Lah J., Drobnak I., '''Dolinar M.''', Vesnaver G. (2008) What drives the binding of minor groove-directed ligands to DNA hairpins? Nucl. Acids Res. 36 (3), 897-904. [http://nar.oxfordjournals.org/cgi/content/full/36/3/897 Open Access]
*Lah J., Drobnak I., '''Dolinar M.''', Vesnaver G. (2008) What drives the binding of minor groove-directed ligands to DNA hairpins? Nucl. Acids Res. 36 (3), 897-904. [http://nar.oxfordjournals.org/cgi/content/full/36/3/897 Open Access]
Line 37: Line 39:
*Okeoma C.M., '''Lovšin N.''', Peterlin B.M., Ross S.R. (2007) APOBEC3 inhibits mouse mammary tumour virus replication ''in vivo''. Nature 445, 927-930. [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17259974&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PubMed]
*Okeoma C.M., '''Lovšin N.''', Peterlin B.M., Ross S.R. (2007) APOBEC3 inhibits mouse mammary tumour virus replication ''in vivo''. Nature 445, 927-930. [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17259974&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum PubMed]
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*Jevševar S., '''Palčič J.''', Jalen Š., Pavko A. (2007) Influence of the media composition on behavior of pET expression systems. Acta Chim. Slov. 54, 360-365 [[http://acta.chem-soc.si/54/54-2-360.pdf free access]]
 
== 2006 ==
== 2006 ==

Revision as of 09:29, 7 January 2010

This is the list of recent publications of our group members with links to summaries or full texts.

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Contents

2010

  • Škrlj N., Vidrih Z., Dolinar M. (2010) A universal approach for promoter strength evaluation supported by the web-based tool PromCal. Anal. Biochem. 396, 83–90. DOI


2009

  • Low A., Okeoma C.M., Lovšin N., de Las Heras M., Taylor T.H., Peterlin B.M., Ross S.R., Fan H. (2009) Enhanced replication and pathogenesis of Moloney murine leukemia virus in mice defective in the murine APOBEC3 gene. Virology 385(2), 455-463. DOI
  • Pungerčar J.R., Caglić D., Sajid M., Dolinar M., Vasiljeva O., Požgan U., Turk D., Bogyo M., Turk V., Turk B. (2009) Autocatalytic processing of procathepsin B is triggered by proenzyme activity. FEBS J. 276(3), 660-668. DOI
  • Škrlj N., Erčulj N., Dolinar M. (2009) A versatile bacterial expression vector based on the synthetic biology plasmid pSB1. Prot. Expr. Purif. 64, 198-204 DOI
  • Škrlj N., Čurin Šerbec V., Dolinar M. (2009) Single-chain Fv antibody fragments retain binding properties of the monoclonal antibody raised against peptide P1 of the human prion protein. Appl. Biochem. Biotechnol. - published online July 14. DOI

2008

  • Yoshinaga K., Obata H., Jurukovski V., Mazzieri R., Chen Y., Zilberberg L., Huso D., Melamed J., Prijatelj P., Todorovic V., Dabovic B., Rifkin D.B. (2008) Perturbation of transforming growth factor (TGF)-beta1 association with latent TGF-beta binding protein yields inflammation and tumors. Proc. Natl. Acad. Sci. USA 105(48), 18758-18763. DOI
  • Halassy B., Habjanec L., Brgles M., Balija M.L., Leonardi A., Kovačič L., Prijatelj P., Tomasić J., Križaj I. (2008) The role of antibodies specific for toxic sPLA2s and haemorrhagins in neutralizing potential of antisera raised against Vipera ammodytes ammodytes venom. Compar. Biochem. Physiol. C: Toxicol. Pharmacol. 148 (2), 178-183. ScienceDirect
  • Prijatelj P., Jenko Pražnikar Z., Petan T., Križaj I., Pungerčar J. (2008) Mapping the structural determinants of presynaptic neurotoxicity of snake venom phospholipases A2. Toxicon 51(8) 1520-1529. ScienceDirect
  • Bubik A., Sedmak B., Novinec M., Lenarčič B., Lah T.T. (2008) Cytotoxic and peptidase inhibitory activities of selected non-hepatotoxic cyclic peptides from cyanobacteria. Biol. Chem. 389(10), 1339-1346. DOI
  • Novinec M., Kovačič L., Škrlj N., Turk V., Lenarčič B. (2008) Recombinant human SMOCs produced by in vitro refolding: calcium-binding properties and interactions with serum proteins. Prot. Expr. Purif. 62(1), 75-82. DOI
  • Aguiar R.S., Lovšin N., Tanuri A., Peterlin B.M. (2008) VPR.A3A chimera inhibits HIV replication. J. Biol. Chem. 283 (5), 2518-2525. JBC-online
  • Pavšič M., Turk V., Lenarčič B. (2008) Purification and characterization of a recombinant human testican-2 expressed in baculovirus-infected Sf9 insect cells. Prot. Expr. Purif. 58(1) 132-139. DOI
  • Lah J., Drobnak I., Dolinar M., Vesnaver G. (2008) What drives the binding of minor groove-directed ligands to DNA hairpins? Nucl. Acids Res. 36 (3), 897-904. Open Access

2007

  • Ciglič M., Fekonja O., Kovač J., Oblak A., Pohar J., Skočaj M., Tkavc R., Benčina M., Panter G., Manček Keber M., Dolinar M., Jerala R. (2007) Engineered human cells: say no to sepsis. IET Synth. Biol. 1(1-2), 13-16. IET Digital Library
  • Novinec M., Grass R.N., Stark W.J., Turk V., Baici A., Lenarčič B. (2007) Interaction between human cathepsins K, L, and S and elastins. J. Biol. Chem. 282 (11), 7893-7902. PubMed
  • Okeoma C.M., Lovšin N., Peterlin B.M., Ross S.R. (2007) APOBEC3 inhibits mouse mammary tumour virus replication in vivo. Nature 445, 927-930. PubMed


2006

  • Kosec G., Alvarez V., Agüero F., Sanchez D., Dolinar M., Turk B., Turk V., Cazzulo J.J. (2006) Metacaspases of Trypanosoma cruzi: possible candidates for programmed cell death mediators. Mol. Biochem. Parasitol. 145, 18-28. PubMed
  • Novinec M., Kordiš D., Turk V., Lenarčič B. (2006) Diversity and evolution of the thyroglobulin type-1 domain superfamily. Mol. Biol. Evol. 23(4),744-755. PubMed
  • Prijatelj P., Charnay M., Ivanovski G., Jenko Z., Pungercar J., Krizaj I., Faure G. (2006) The C-terminal and beta-wing regions of ammodytoxin A, a neurotoxic phospholipase A2 from Vipera ammodytes ammodytes, are critical for binding to factor Xa and for anticoagulant effect. Biochimie 88(1), 69-76. PubMed
  • Prijatelj P., Vardjan N., Rowan E.G., Križaj I., Pungerčar J. (2006) Binding to the high-affinity M-type receptor for secreted phospholipases A(2) is not obligatory for the presynaptic neurotoxicity of ammodytoxin A. Biochimie 88(10), 1425-1433. PubMed

2005

  • Fontana L., Chen Y., Prijatelj P., Sakai T., Fassler R., Sakai L.Y., Rifkin D.B. (2005) Fibronectin is required for integrin alpha vbeta6-mediated activation of latent TGF-beta complexes containing LTBP-1. FASEB J. 19(13), 1798-808. PubMed
  • Grujić M., Zavašnik-Bergant T., Pejler G., Renko M. (2005) Actinonin induces apoptosis in U937 leukemia cells. Cancer Lett. 223, 211-218. PubMed
  • Meh P., Pavšič M., Turk V., Baici A., Lenarčič B. (2005) Dual concentration-dependent activity of thyroglobulin type-1 domain of testican: specific inhibitor and substrate of cathepsin L. Biol. Chem. 386, 75-83. PubMed
  • Vasiljeva O., Dolinar M., Rozman Pungerčar J., Turk V., Turk B. (2005) Recombinant human procathepsin S is capable of autocatalytic processing at neutral pH in the presence of glycosaminoglycans. FEBS Lett. 579, 1285-1290. PubMed
  • Zheng Y.H., Lovšin N., Peterlin B.M. (2005) Newly identified host factors modulate HIV replication. Immunol Lett. 97(2), 225-34. PubMed


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