Farre Lab

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[[Farre Lab:Research |<h3><font style="color:#228B22;">Research</font></h3>]]
[[Farre Lab:Research |<h3><font style="color:#228B22;">Research</font></h3>]]
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Our goal is to understand how circadian clocks work and why they play such a key role in growth and development.  
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Our goal is to understand how circadian clocks work and why they play such an important role in growth and stress responses. We study the regulation and role of circadian rhythms in plants and algae. Circadian rhythms are necessary for optimal growth and survival in several photosynthetic species, including ''Chlamydomonas rheinhardtii'', ''Synechocystes'' sp. and ''Arabidopsis thaliana''. Although circadian clocks share a basic architecture, they differ in their molecular components and appear not to be conserved between different taxa.  
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We study the regulation and role of circadian rhythms in plants, which as sessile and autotrophic organisms rely heavily on daily and seasonal changes for their development and growth. Recent findings show that the appropriate resonance of internal rhythms with daily environmental rhythms optimizes plant growth and survival. During the last few years, a large number of clock components have been identified in plants. However, knowledge of the molecular mechanisms involved in plant circadian clocks lags behind studies in other organisms such as Drosophila and Cyanobacteria. Although circadian clocks share a basic architecture among different taxa, they differ in their molecular components. Thus the study of circadian rhythms in plants will help define not only their role on plant specific processes but also the design principles of circadian oscillators.  
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We work on the model plant ''Arabidopsis thaliana'' and have recently started analyzing rhythms in the heterokont alga ''Nannochloropsis oceanica''.  
[[Farre_Lab:Research | read more...]]
[[Farre_Lab:Research | read more...]]
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*[[Farre_Lab:Eva_Farre|Eva Farre]]
*[[Farre_Lab:Eva_Farre|Eva Farre]]
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*[[Farre_Lab:Tomomi Takeuchi|Tomomi Takeuchi]]
 
*[[Farre_Lab:Linsey Newton|Linsey Newton]]
*[[Farre_Lab:Linsey Newton|Linsey Newton]]
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*[[Farre_Lab:Tiffany Liu|Tiffany Liu]]
 
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*[[Farre_Lab:Andrew Lapinsky|Andrew Lapinsky]]
 
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*[[Farre_Lab:Cary Krug|Cary Krug]]
 
*[[USer:Eric R Poliner|Eric Poliner]]
*[[USer:Eric R Poliner|Eric Poliner]]
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*[[USer:Sam Ballard|Sam Ballard]]
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*[[Farre_Lab: Cody Bekkering|Cody Bekkering]]
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*[[USer:Adrian Hülsewede|Adrian Hülsewede]]
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*[[Farre_Lab: Cameron Cummings|Cameron Cummings]]
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*[[USer:Katerina Lay|Katerina Lay]]
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*[[Farre_Lab: Daphne Onsay|Daphne Onsay]]
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*[[Farre_Lab:Open_positions|Open Positions: graduate student]]
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*[[Farre_Lab:Open_positions|Open Positions:
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Undergraduate assistant]]
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[[Farre_Lab:Publications |<h3><font style="color:#F8B603;">Publications</font></h3>]]
[[Farre_Lab:Publications |<h3><font style="color:#F8B603;">Publications</font></h3>]]
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*Liu T, Carlsson J, Takeuchi T, Newton L (in press) Direct regulation of abiotic responses by the Arabidopsis circadian clock component PRR7. Plant Journal.[http://www.ncbi.nlm.nih.gov/pubmed/23808423 PubMed]
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*Liu T, Newton L, Liu MJ, Shiu SH, Farre EM. A G-box-like motif is necessary for transcriptional regulation by circadian pseudo-response regulators in Arabidopsis(2016) Plant Physiology 170(1):528-39 [http://www.ncbi.nlm.nih.gov/pubmed/26586835  PubMed].
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*Farré EM, Liu T (in press) The PRR family of transcriptional regulators reflects the complexity and evolution of plant circadian clocks. Curr Opin Plant Biol.[http://www.ncbi.nlm.nih.gov/pubmed/23856081 PubMed]  
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'''NOTE:''' An updated corrected version of the manuscript has been published online (Jan. 20, 2016)
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*Poliner E, Panchy N, Newton L, Wu G, Lapinsky A, Bullard B, Zienkiewicz A, Benning C, Shiu S-H, Farré EM (2015) Transcriptional coordination of physiological responses in ''Nannochloropsis oceanica'' CCMP1779 under light/dark cycles. Plant J. 83(6):1097-113 [http://www.ncbi.nlm.nih.gov/pubmed/26216534 Pubmed]
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*Horak E, Farré EM (2015)The regulation of UV-B responses by the circadian clock. Plant Signaling and Behavior 10(5):e1000164.
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*Takeuchi T, Newton L, Burkhardt A, Mason S, Farre EM (2014) Light and the circadian clock mediate time specific changes in sensitivity to UV-B stress under light/dark cycles. Journal of Experimental Botany 65(20):6003-12 [http://www.ncbi.nlm.nih.gov/pubmed/25147271 PubMed]
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*Braun R, Farré EM, Schurr U, Matsubara S (2014) Effects of light and circadian clock on growth and chlorophyll accumulation of Nannochloropsis gaditana. Journal of Phycology 50(1):515–525 [http://onlinelibrary.wiley.com/doi/10.1111/jpy.12177/abstract]
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*Liu T, Carlsson J, Takeuchi T, Newton L (2013) Direct regulation of abiotic responses by the Arabidopsis circadian clock component PRR7. Plant J 76(1):101-14[http://www.ncbi.nlm.nih.gov/pubmed/23808423 PubMed]
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*Farré EM, Liu T (2013) The PRR family of transcriptional regulators reflects the complexity and evolution of plant circadian clocks. Curr Opin Plant Biol 16(5):621-9[http://www.ncbi.nlm.nih.gov/pubmed/23856081 PubMed]  
*Vieler et al. (2012) Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779. Plos Genetics8(11):e1003064. [http://www.ncbi.nlm.nih.gov/pubmed?term=Plos%20Genetics%20Vieler%20Benning Pubmed]
*Vieler et al. (2012) Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779. Plos Genetics8(11):e1003064. [http://www.ncbi.nlm.nih.gov/pubmed?term=Plos%20Genetics%20Vieler%20Benning Pubmed]
*Farré EM, Weise SE (2012) The interactions between the circadian clock and primary metabolism. Curr Opin Plant Biol 15(3):293-300. [http://www.ncbi.nlm.nih.gov/pubmed/22305520 PubMed]
*Farré EM, Weise SE (2012) The interactions between the circadian clock and primary metabolism. Curr Opin Plant Biol 15(3):293-300. [http://www.ncbi.nlm.nih.gov/pubmed/22305520 PubMed]
*Farre EM (2012) The regulation of plant growth by the circadian clock. Plant Biol 14(3):401-10.[http://www.ncbi.nlm.nih.gov/pubmed/22284304 PubMed]
*Farre EM (2012) The regulation of plant growth by the circadian clock. Plant Biol 14(3):401-10.[http://www.ncbi.nlm.nih.gov/pubmed/22284304 PubMed]
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*Nusinow DA, Helfer A, Hamilton EE, King JJ, Imaizumi T, Schultz TF, Farré EM, Kay SA (2011) The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth. Nature 475:398-402.[http://www.ncbi.nlm.nih.gov/pubmed/21753751 PubMed]
 
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*Dong M, Farre EM, Thomashow MF (2011) CIRCADIAN CLOCK-ASSOCIATED 1 and LATE ELONGATED HYPOCOTYL regulate expression of the C-REPEAT BINDING FACTOR (CBF) pathway in Arabidopsis. PNAS 108(17):7241-6.[http://www.ncbi.nlm.nih.gov/pubmed/21471455 PubMed]
 
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*Farre EM and Kay SA (2007) PRR7 Protein levels are regulated by light and the circadian clock in Arabidopsis. Plant J 52 (3):548–560.
 
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[[Farre_Lab:Research |<h3><font style="color:#F8B603;">Announcements</font></h3>]]
[[Farre_Lab:Research |<h3><font style="color:#F8B603;">Announcements</font></h3>]]
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*'''Congratulations Daphne for the Norman A. Good Scholarship Award'''!
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*'''Congratulations Cody for the outstanding senior Bessey Award'''!
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* We are looking for rotation students interested in working on rhythms.
*[[Farre_Lab:Announcements | Group meeting, journal clubs, and seminars]]<br>
*[[Farre_Lab:Announcements | Group meeting, journal clubs, and seminars]]<br>
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*[http://news.msu.edu/story/grand-opening-to-celebrate-new-msu-plant-science-building/| Our Lab has moved to the new Plant Molecular Science Building]
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* Welcome Adrian Huelsewede from the [http://www.uni-duesseldorf.de/iGRAD/| iGRAD PhD program], Katerina Lay from [http://plantgenomics.msu.edu Plant Genomics Undergraduate Program at MSU] and Duncan McDonald from [[Farre Lab:Farre-Teaching&Research Program|Farre Lab NSF funded Research & Teaching program for pre-service teachers]]
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[[Farre_Lab:Links |<h3><font style="color:red">Links</font></h3>]]
[[Farre_Lab:Links |<h3><font style="color:red">Links</font></h3>]]
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*[[Farre Lab:Farre-Teaching&Research Program|Farre Lab NSF funded Research & Teaching program for pre-service teachers]]
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*[https://sites.google.com/a/msu.edu/research-teaching-msu/ Farre Lab NSF funded Teaching & Research program for pre-service teachers]
*[[Farre_Lab:Links|MSU Links]]
*[[Farre_Lab:Links|MSU Links]]
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*[[Farre_Lab:Links|For Graduate students]]
*[[Farre_Lab:Links|Other Circadian Labs]]
*[[Farre_Lab:Links|Other Circadian Labs]]
*[http://plantgenomics.msu.edu Plant Genomics Undergraduate Program at MSU]
*[http://plantgenomics.msu.edu Plant Genomics Undergraduate Program at MSU]
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*[[Farre_Lab:Links|Other Interesting Links]]
*[[Farre_Lab:Links|Other Interesting Links]]
*[[Farre_Lab:Links|Rhythm Movies]]
*[[Farre_Lab:Links|Rhythm Movies]]
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*[http://www.hulu.com/watch/16417/saturday-night-live-googly-eyes-gardener| Gardening Tips]
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*[http://www.hulu.com/watch/16417/saturday-night-live-googly-eyes-gardener| Plant humor: Gardening Tips]
*http://www.openwetware.org http://openwetware.org/images/0/01/80x15_openwetware.png
*http://www.openwetware.org http://openwetware.org/images/0/01/80x15_openwetware.png
<h3><font style="color:red">Funding</font></h3>
<h3><font style="color:red">Funding</font></h3>

Current revision

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Research

Our goal is to understand how circadian clocks work and why they play such an important role in growth and stress responses. We study the regulation and role of circadian rhythms in plants and algae. Circadian rhythms are necessary for optimal growth and survival in several photosynthetic species, including Chlamydomonas rheinhardtii, Synechocystes sp. and Arabidopsis thaliana. Although circadian clocks share a basic architecture, they differ in their molecular components and appear not to be conserved between different taxa.

We work on the model plant Arabidopsis thaliana and have recently started analyzing rhythms in the heterokont alga Nannochloropsis oceanica.

read more...

Lab Members


Publications

  • Liu T, Newton L, Liu MJ, Shiu SH, Farre EM. A G-box-like motif is necessary for transcriptional regulation by circadian pseudo-response regulators in Arabidopsis(2016) Plant Physiology 170(1):528-39 PubMed.

NOTE: An updated corrected version of the manuscript has been published online (Jan. 20, 2016)

  • Poliner E, Panchy N, Newton L, Wu G, Lapinsky A, Bullard B, Zienkiewicz A, Benning C, Shiu S-H, Farré EM (2015) Transcriptional coordination of physiological responses in Nannochloropsis oceanica CCMP1779 under light/dark cycles. Plant J. 83(6):1097-113 Pubmed
  • Horak E, Farré EM (2015)The regulation of UV-B responses by the circadian clock. Plant Signaling and Behavior 10(5):e1000164.
  • Takeuchi T, Newton L, Burkhardt A, Mason S, Farre EM (2014) Light and the circadian clock mediate time specific changes in sensitivity to UV-B stress under light/dark cycles. Journal of Experimental Botany 65(20):6003-12 PubMed
  • Braun R, Farré EM, Schurr U, Matsubara S (2014) Effects of light and circadian clock on growth and chlorophyll accumulation of Nannochloropsis gaditana. Journal of Phycology 50(1):515–525 [1]
  • Liu T, Carlsson J, Takeuchi T, Newton L (2013) Direct regulation of abiotic responses by the Arabidopsis circadian clock component PRR7. Plant J 76(1):101-14PubMed
  • Farré EM, Liu T (2013) The PRR family of transcriptional regulators reflects the complexity and evolution of plant circadian clocks. Curr Opin Plant Biol 16(5):621-9PubMed
  • Vieler et al. (2012) Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779. Plos Genetics8(11):e1003064. Pubmed
  • Farré EM, Weise SE (2012) The interactions between the circadian clock and primary metabolism. Curr Opin Plant Biol 15(3):293-300. PubMed
  • Farre EM (2012) The regulation of plant growth by the circadian clock. Plant Biol 14(3):401-10.PubMed


see complete list...

Announcements

  • Congratulations Daphne for the Norman A. Good Scholarship Award!
  • Congratulations Cody for the outstanding senior Bessey Award!
  • We are looking for rotation students interested in working on rhythms.
  • Group meeting, journal clubs, and seminars


Links

Funding

  • NSF
  • MSU
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