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<h3><font style="color:#228B22;">Research</font></h3>
[[Farre Lab:Research |<h3><font style="color:#228B22;">Research</font></h3>]]


Our goal is to understand how circadian clocks work and why they play such a key role in growth and development.  
Our goal is to understand how circadian clocks work and why they play such a key role in growth and development. We study the regulation and role of circadian rhythms in plants and alga. Circadian rhythms are necessary for optimal growth and survival in several photosynthetic species, including ''Chlamydomonas rheinhardtii'', ''Synechocystes'' sp. and ''Arabidopsis thaliana''. Although circadian clocks share a basic architecture, they differ in their molecular components and appear to not to be conserved between different taxa.  


We study the regulation and role of circadian rhythms in plants, which as sessile and autotrophic organisms rely heavily on daily and seasonal changes for their development and growth. Recent findings show that the appropriate resonance of internal rhythms with daily environmental rhythms optimizes plant growth and survival. During the last few years, a large number of clock components have been identified in plants. However, knowledge of the molecular mechanisms involved in plant circadian clocks lags behind studies in other organisms such as Drosophila and Cyanobacteria. Although circadian clocks share a basic architecture among different taxa, they differ in their molecular components. Thus the study of circadian rhythms in plants will help define not only their role on plant specific processes but also the design principles of circadian oscillators.  
We work on the model plant ''Arabidopsis thaliana'' and have recently started analyzing rhythms in the heterokont alga ''Nannochloropsis oceanica''.  


[[Farre_Lab:Research | read more...]]
[[Farre_Lab:Research | read more...]]
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*<h3><font style="color:#FF4500;">Lab Members</font></h3>
[[Farre_Lab:People |<h3><font style="color:#FF4500;">Lab Members</font></h3>]]


*[[Farre_Lab:Eva_Farre|Eva Farre]]
*[[Farre_Lab:Eva_Farre|Eva Farre]]
*[[Farre_Lab:Open_positions|Open Positions]]
*[[Farre_Lab:Linsey Newton|Linsey Newton]]
*[[Farre_Lab:Tiffany Liu|Tiffany Liu]]
*[[Farre_Lab:Andrew Lapinsky|Andrew Lapinsky]]
*[[USer:Eric R Poliner|Eric Poliner]]
*[[USer:Tyler Messenger|Tyler Messenger]]
 
*[[Farre_Lab:Open_positions|Open Positions:
Undergraduate assistant]]




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<h3><font style="color:#F8B603;">Publications</font></h3>  
[[Farre_Lab:Publications |<h3><font style="color:#F8B603;">Publications</font></h3>]]
*Braun R, Farré EM, Schurr U, Matsubara S (in press) Effects of light and circadian clock on growth and chlorophyll accumulation of Nannochloropsis gaditana. Journal of Phycology [http://onlinelibrary.wiley.com/doi/10.1111/jpy.12177/abstract]
*Liu T, Carlsson J, Takeuchi T, Newton L (2013) Direct regulation of abiotic responses by the Arabidopsis circadian clock component PRR7. Plant Journal.Plant J 76(1):101-14[http://www.ncbi.nlm.nih.gov/pubmed/23808423 PubMed]
*Farré EM, Liu T (2013) The PRR family of transcriptional regulators reflects the complexity and evolution of plant circadian clocks. Curr Opin Plant Biol 16(5):621-9[http://www.ncbi.nlm.nih.gov/pubmed/23856081 PubMed]
*Vieler et al. (2012) Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779. Plos Genetics8(11):e1003064. [http://www.ncbi.nlm.nih.gov/pubmed?term=Plos%20Genetics%20Vieler%20Benning Pubmed]
*Farré EM, Weise SE (2012) The interactions between the circadian clock and primary metabolism. Curr Opin Plant Biol 15(3):293-300. [http://www.ncbi.nlm.nih.gov/pubmed/22305520 PubMed]
*Farre EM (2012) The regulation of plant growth by the circadian clock. Plant Biol 14(3):401-10.[http://www.ncbi.nlm.nih.gov/pubmed/22284304 PubMed]
*Nusinow DA, Helfer A, Hamilton EE, King JJ, Imaizumi T, Schultz TF, Farré EM, Kay SA (2011) The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth. Nature 475:398-402.[http://www.ncbi.nlm.nih.gov/pubmed/21753751 PubMed]
*Dong M, Farre EM, Thomashow MF (2011) CIRCADIAN CLOCK-ASSOCIATED 1 and LATE ELONGATED HYPOCOTYL regulate expression of the C-REPEAT BINDING FACTOR (CBF) pathway in Arabidopsis. PNAS 108(17):7241-6.[http://www.ncbi.nlm.nih.gov/pubmed/21471455 PubMed]


*Farre EM and Kay SA (2007) PRR7 Protein levels are regulated by light and the circadian clock in Arabidopsis. Plant J 52 (3):548–560.


*Para A, Farre EM, Imaizumi T, Pruneda-Paz J, Harmon FG, Kay SA (2007). PRR3 is a vascular regulator of TOC1 stability in the Arabidopsis circadian clock. Plant Cell 19:3462-3473.
*Zeilinger MN, Farre EM, Taylor SR, Kay SA and Doyle FJ III (2006) A novel computational model of the circadian clock in Arabidopsis that incorporates PRR7 and PRR9. Mol Syst Biol 2: 58.
*Farre EM, Harmer SL, Harmon FG, Yanovsky MJ, Kay SA.  (2005) Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock. Curr Biol 15(1):47-54.


[[Farre_Lab:Publications | see complete list...]]


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*[[Farre_Lab:Publications | see complete list...]]
[[Farre_Lab:Research |<h3><font style="color:#F8B603;">Announcements</font></h3>]]
 
* Andrew Lapinsky has been awarded the Bessey Award for Outstanding Senior in Plant Biology. Congratulations!
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*[[Farre_Lab:Announcements | Group meeting, journal clubs, and seminars]]<br>


<h3><font style="color:#F8B603;">Announcements</font></h3>
*[[Media:201404330-Map-MPSB.jpg| Our Lab has moved to the new Plant Molecular Science Building]]
*[[Maloof_Lab:Group_meeting|Group meeting, journal clubs, and seminars]]
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<h3><font style="color:red">Links</font></h3>
[[Farre_Lab:Links |<h3><font style="color:red">Links</font></h3>]]
*[http://biology.ucsd.edu/labs/kay/index.html Kay Lab]
*[[Farre Lab:NSF_T&R|Farre Lab NSF funded Research & Teaching program for pre-service teachers]]
*[http://mocklerlab.cgrb.oregonstate.edu/ Mockler Lab]
*[[Farre_Lab:Links|MSU Links]]
*[http://millar.bio.ed.ac.uk/ Millar Lab]
*[[Farre_Lab:Links|Other Circadian Labs]]
*[http://www-plb.ucdavis.edu/labs/harmer/intro.htm Harmer Lab]
*[http://plantgenomics.msu.edu Plant Genomics Undergraduate Program at MSU]
*[http://www.biosci.ohio-state.edu/pcmb/osu_pcmb/people_faculty_somersDavid.php Somers Lab]
*[[Farre_Lab:Links|Tools]]
*[http://www.plantsci.cam.ac.uk/research/alexwebb.html Webb Lab]
*[[Farre_Lab:Links|Other Interesting Links]]
*[[Farre_Lab:Links|Rhythm Movies]]
*[http://www.hulu.com/watch/16417/saturday-night-live-googly-eyes-gardener| Gardening Tips]
*http://www.openwetware.org http://openwetware.org/images/0/01/80x15_openwetware.png
<h3><font style="color:red">Funding</font></h3>
*NSF
*MSU
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Revision as of 10:08, 16 May 2014


Home        Research        Publications        People        Links        Teaching        Contact       


Research

Our goal is to understand how circadian clocks work and why they play such a key role in growth and development. We study the regulation and role of circadian rhythms in plants and alga. Circadian rhythms are necessary for optimal growth and survival in several photosynthetic species, including Chlamydomonas rheinhardtii, Synechocystes sp. and Arabidopsis thaliana. Although circadian clocks share a basic architecture, they differ in their molecular components and appear to not to be conserved between different taxa.

We work on the model plant Arabidopsis thaliana and have recently started analyzing rhythms in the heterokont alga Nannochloropsis oceanica.

read more...

Lab Members


Publications

  • Braun R, Farré EM, Schurr U, Matsubara S (in press) Effects of light and circadian clock on growth and chlorophyll accumulation of Nannochloropsis gaditana. Journal of Phycology [1]
  • Liu T, Carlsson J, Takeuchi T, Newton L (2013) Direct regulation of abiotic responses by the Arabidopsis circadian clock component PRR7. Plant Journal.Plant J 76(1):101-14PubMed
  • Farré EM, Liu T (2013) The PRR family of transcriptional regulators reflects the complexity and evolution of plant circadian clocks. Curr Opin Plant Biol 16(5):621-9PubMed
  • Vieler et al. (2012) Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779. Plos Genetics8(11):e1003064. Pubmed
  • Farré EM, Weise SE (2012) The interactions between the circadian clock and primary metabolism. Curr Opin Plant Biol 15(3):293-300. PubMed
  • Farre EM (2012) The regulation of plant growth by the circadian clock. Plant Biol 14(3):401-10.PubMed
  • Nusinow DA, Helfer A, Hamilton EE, King JJ, Imaizumi T, Schultz TF, Farré EM, Kay SA (2011) The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth. Nature 475:398-402.PubMed
  • Dong M, Farre EM, Thomashow MF (2011) CIRCADIAN CLOCK-ASSOCIATED 1 and LATE ELONGATED HYPOCOTYL regulate expression of the C-REPEAT BINDING FACTOR (CBF) pathway in Arabidopsis. PNAS 108(17):7241-6.PubMed


see complete list...

Announcements

Links

Funding

  • NSF
  • MSU
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