Farre Lab: Difference between revisions
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[[Farre Lab:Research |<h3><font style="color:#228B22;">Research</font></h3>]] | [[Farre Lab:Research |<h3><font style="color:#228B22;">Research</font></h3>]] | ||
Our goal is to understand how circadian clocks work and why they play such | Our goal is to understand how circadian clocks work and why they play such an important role in growth and stress responses. We study the regulation and role of circadian rhythms in plants and algae. Circadian rhythms are necessary for optimal growth and survival in several photosynthetic species, including ''Chlamydomonas rheinhardtii'', ''Synechocystes'' sp. and ''Arabidopsis thaliana''. Although circadian clocks share a basic architecture, they differ in their molecular components and appear not to be conserved between different taxa. | ||
We | We work on the model plant ''Arabidopsis thaliana'' and have recently started analyzing rhythms in the heterokont alga ''Nannochloropsis oceanica''. | ||
[[Farre_Lab:Research | read more...]] | [[Farre_Lab:Research | read more...]] | ||
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*[[Farre_Lab:Eva_Farre|Eva Farre]] | *[[Farre_Lab:Eva_Farre|Eva Farre]] | ||
*[[Farre_Lab:Linsey Newton|Linsey Newton]] | *[[Farre_Lab:Linsey Newton|Linsey Newton]] | ||
*[[Farre_Lab: | *[[USer:Eric R Poliner|Eric Poliner]] | ||
*[[Farre_Lab: | *[[Farre_Lab: Cameron Cummings|Cameron Cummings]] | ||
*[[Farre_Lab: | *[[Farre_Lab: Lauren Bedro|Lauren Bedro]] | ||
*[[Farre_Lab:Open_positions|Open Positions: | *[[Farre_Lab: Traverse Cottrell|Traverse Cottrell]] | ||
*[[Farre_Lab:Open_positions|Open Positions: graduate student]] | |||
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[[Farre_Lab:Publications |<h3><font style="color:#F8B603;">Publications</font></h3>]] | [[Farre_Lab:Publications |<h3><font style="color:#F8B603;">Publications</font></h3>]] | ||
*Poliner E, Zienkiewicz K, Pullman J, Newton L, Benning C, Farré EM. A toolkit for Nannochloropsis oceanica CCMP1779 enables gene stacking and genetic engineering of the eicosapentaenoic acid pathway for enhanced fatty acid production. Plant Biotechnology Journal (in press) [https://www.ncbi.nlm.nih.gov/pubmed/28605577 Pubmed] | |||
* | *Zienkiewicz K, Zienkiewicz A, Poliner E, Du ZY, Vollheyde K, Herrfurth C, Marmon S, Farré EM, Feussner I, Benning C (2017). Nannochloropsis, a rich source of diacylglycerol acyltransferases for engineering of triacylglycerol content in different hosts. Biotechnology for Biofuels 10:8 [https://www.ncbi.nlm.nih.gov/pubmed/28070221 Pubmed] | ||
*Liu T, Newton L, Liu MJ, Shiu SH, Farre EM. A G-box-like motif is necessary for transcriptional regulation by circadian pseudo-response regulators in Arabidopsis(2016) Plant Physiology 170(1):528-39 [http://www.ncbi.nlm.nih.gov/pubmed/26586835 PubMed]. | |||
* | '''NOTE:''' An updated corrected version of the manuscript has been published online (Jan. 20, 2016) | ||
*Poliner E, Panchy N, Newton L, Wu G, Lapinsky A, Bullard B, Zienkiewicz A, Benning C, Shiu S-H, Farré EM (2015) Transcriptional coordination of physiological responses in ''Nannochloropsis oceanica'' CCMP1779 under light/dark cycles. Plant J. 83(6):1097-113 [http://www.ncbi.nlm.nih.gov/pubmed/26216534 Pubmed] | |||
* | *Horak E, Farré EM (2015)The regulation of UV-B responses by the circadian clock. Plant Signaling and Behavior 10(5):e1000164. | ||
*Takeuchi T, Newton L, Burkhardt A, Mason S, Farre EM (2014) Light and the circadian clock mediate time specific changes in sensitivity to UV-B stress under light/dark cycles. Journal of Experimental Botany 65(20):6003-12 [http://www.ncbi.nlm.nih.gov/pubmed/25147271 PubMed] | |||
* | *Braun R, Farré EM, Schurr U, Matsubara S (2014) Effects of light and circadian clock on growth and chlorophyll accumulation of Nannochloropsis gaditana. Journal of Phycology 50(1):515–525 [http://onlinelibrary.wiley.com/doi/10.1111/jpy.12177/abstract] | ||
*Liu T, Carlsson J, Takeuchi T, Newton L (2013) Direct regulation of abiotic responses by the Arabidopsis circadian clock component PRR7. Plant J 76(1):101-14[http://www.ncbi.nlm.nih.gov/pubmed/23808423 PubMed] | |||
*Farré EM, Liu T (2013) The PRR family of transcriptional regulators reflects the complexity and evolution of plant circadian clocks. Curr Opin Plant Biol 16(5):621-9[http://www.ncbi.nlm.nih.gov/pubmed/23856081 PubMed] | |||
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[[Farre_Lab:Research |<h3><font style="color:#F8B603;">Announcements</font></h3>]] | [[Farre_Lab:Research |<h3><font style="color:#F8B603;">Announcements</font></h3>]] | ||
*'''Congratulations Cameron for his Poster Award at the Spring University Undergraduate Research and Arts Forum '''! | |||
* We are looking for rotation students interested in working on rhythms. | |||
*[[Farre_Lab:Announcements | Group meeting, journal clubs, and seminars]]<br> | *[[Farre_Lab:Announcements | Group meeting, journal clubs, and seminars]]<br> | ||
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|style="padding: 5px; background-color: #ffffff; border: 2px solid red;" | | |style="padding: 5px; background-color: #ffffff; border: 2px solid red;" | | ||
[[Farre_Lab:Links |<h3><font style="color:red">Links</font></h3>]] | [[Farre_Lab:Links |<h3><font style="color:red">Links</font></h3>]] | ||
*[https://sites.google.com/a/msu.edu/research-teaching-msu/ Farre Lab NSF funded Teaching & Research program for pre-service teachers] | |||
*[[Farre_Lab:Links|MSU Links]] | *[[Farre_Lab:Links|MSU Links]] | ||
*[[Farre_Lab:Links|For Graduate students]] | |||
*[[Farre_Lab:Links|Other Circadian Labs]] | *[[Farre_Lab:Links|Other Circadian Labs]] | ||
*[http://plantgenomics.msu.edu Plant Genomics Undergraduate Program at MSU] | |||
*[[Farre_Lab:Links|Tools]] | *[[Farre_Lab:Links|Tools]] | ||
*[[Farre_Lab:Links|Other Interesting Links]] | *[[Farre_Lab:Links|Other Interesting Links]] | ||
*[[Farre_Lab:Links|Rhythm Movies]] | *[[Farre_Lab:Links|Rhythm Movies]] | ||
*[http://www.hulu.com/watch/16417/saturday-night-live-googly-eyes-gardener| Gardening Tips] | *[http://www.hulu.com/watch/16417/saturday-night-live-googly-eyes-gardener| Plant humor: Gardening Tips] | ||
*http://www.openwetware.org http://openwetware.org/images/0/01/80x15_openwetware.png | *http://www.openwetware.org http://openwetware.org/images/0/01/80x15_openwetware.png | ||
<h3><font style="color:red">Funding</font></h3> | |||
*NSF | |||
*MSU | |||
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Revision as of 06:31, 19 June 2017
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ResearchOur goal is to understand how circadian clocks work and why they play such an important role in growth and stress responses. We study the regulation and role of circadian rhythms in plants and algae. Circadian rhythms are necessary for optimal growth and survival in several photosynthetic species, including Chlamydomonas rheinhardtii, Synechocystes sp. and Arabidopsis thaliana. Although circadian clocks share a basic architecture, they differ in their molecular components and appear not to be conserved between different taxa. We work on the model plant Arabidopsis thaliana and have recently started analyzing rhythms in the heterokont alga Nannochloropsis oceanica. |
Lab Members |
Publications
NOTE: An updated corrected version of the manuscript has been published online (Jan. 20, 2016)
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Announcements
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Links
Funding
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