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*[[Farre_Lab:Eva_Farre|Eva Farre]]
*[[Farre_Lab:Eva_Farre|Eva Farre]]
*[[Farre_Lab:Linsey Newton|Linsey Newton]]
*[[Farre_Lab:Linsey Newton|Linsey Newton]]
*[[Farre_Lab:Tiffany Liu|Tiffany Liu]]
*[[USer:Eric R Poliner|Eric Poliner]]
*[[USer:Eric R Poliner|Eric Poliner]]
*[[Farre_Lab: Cody Bekkering|Cody Bekkering]]
*[[Farre_Lab: Cameron Cummings|Cameron Cummings]]
*[[Farre_Lab: Trang Le|Trang Le]]
*[[Farre_Lab: Lauren Bedro|Lauren Bedro]]
*[[Farre_Lab:Open_positions|Open Positions:
*[[Farre_Lab: Traverse Cottrell|Traverse Cottrell]]
Undergraduate assistant, postdoc]]
*[[Farre_Lab:Open_positions|Open Positions: graduate student]]
 
 


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[[Farre_Lab:Publications |<h3><font style="color:#F8B603;">Publications</font></h3>]]
[[Farre_Lab:Publications |<h3><font style="color:#F8B603;">Publications</font></h3>]]
*Poliner E, Panchy N, Newton L, Wu G, Lapinsky A*, Bullard B, Zienkiewicz A, Benning C, Shiu S-H, Farré EM (in press) Transcriptional coordination of physiological responses in ''Nannochloropsis oceanica'' CCMP1779 under light/dark cycles.
*Poliner E, Zienkiewicz K, Pullman J, Newton L, Benning C, Farré EM. A toolkit for Nannochloropsis oceanica CCMP1779 enables gene stacking and genetic engineering of the eicosapentaenoic acid pathway for enhanced fatty acid production. Plant Biotechnology Journal (in press) [https://www.ncbi.nlm.nih.gov/pubmed/28605577 Pubmed]
*Zienkiewicz K, Zienkiewicz A, Poliner E, Du ZY, Vollheyde K, Herrfurth C, Marmon S, Farré EM, Feussner I, Benning C (2017). Nannochloropsis, a rich source of diacylglycerol acyltransferases for engineering of triacylglycerol content in different hosts. Biotechnology for Biofuels 10:8 [https://www.ncbi.nlm.nih.gov/pubmed/28070221 Pubmed]
*Liu T, Newton L, Liu MJ, Shiu SH, Farre EM. A G-box-like motif is necessary for transcriptional regulation by circadian pseudo-response regulators in Arabidopsis(2016) Plant Physiology 170(1):528-39 [http://www.ncbi.nlm.nih.gov/pubmed/26586835  PubMed].
'''NOTE:''' An updated corrected version of the manuscript has been published online (Jan. 20, 2016)
*Poliner E, Panchy N, Newton L, Wu G, Lapinsky A, Bullard B, Zienkiewicz A, Benning C, Shiu S-H, Farré EM (2015) Transcriptional coordination of physiological responses in ''Nannochloropsis oceanica'' CCMP1779 under light/dark cycles. Plant J. 83(6):1097-113 [http://www.ncbi.nlm.nih.gov/pubmed/26216534 Pubmed]
*Horak E, Farré EM (2015)The regulation of UV-B responses by the circadian clock. Plant Signaling and Behavior 10(5):e1000164.
*Horak E, Farré EM (2015)The regulation of UV-B responses by the circadian clock. Plant Signaling and Behavior 10(5):e1000164.
*Takeuchi T, Newton L, Burkhardt A, Mason S, Farre EM (2014) Light and the circadian clock mediate time specific changes in sensitivity to UV-B stress under light/dark cycles. Journal of Experimental Botany 65(20):6003-12 [http://www.ncbi.nlm.nih.gov/pubmed/25147271 PubMed]
*Takeuchi T, Newton L, Burkhardt A, Mason S, Farre EM (2014) Light and the circadian clock mediate time specific changes in sensitivity to UV-B stress under light/dark cycles. Journal of Experimental Botany 65(20):6003-12 [http://www.ncbi.nlm.nih.gov/pubmed/25147271 PubMed]
*Braun R, Farré EM, Schurr U, Matsubara S (2014) Effects of light and circadian clock on growth and chlorophyll accumulation of Nannochloropsis gaditana. Journal of Phycology 50(1):515–525 [http://onlinelibrary.wiley.com/doi/10.1111/jpy.12177/abstract]
*Braun R, Farré EM, Schurr U, Matsubara S (2014) Effects of light and circadian clock on growth and chlorophyll accumulation of Nannochloropsis gaditana. Journal of Phycology 50(1):515–525 [http://onlinelibrary.wiley.com/doi/10.1111/jpy.12177/abstract]
*Liu T, Carlsson J, Takeuchi T, Newton L (2013) Direct regulation of abiotic responses by the Arabidopsis circadian clock component PRR7. Plant Journal.Plant J 76(1):101-14[http://www.ncbi.nlm.nih.gov/pubmed/23808423 PubMed]
*Liu T, Carlsson J, Takeuchi T, Newton L (2013) Direct regulation of abiotic responses by the Arabidopsis circadian clock component PRR7. Plant J 76(1):101-14[http://www.ncbi.nlm.nih.gov/pubmed/23808423 PubMed]
*Farré EM, Liu T (2013) The PRR family of transcriptional regulators reflects the complexity and evolution of plant circadian clocks. Curr Opin Plant Biol 16(5):621-9[http://www.ncbi.nlm.nih.gov/pubmed/23856081 PubMed]  
*Farré EM, Liu T (2013) The PRR family of transcriptional regulators reflects the complexity and evolution of plant circadian clocks. Curr Opin Plant Biol 16(5):621-9[http://www.ncbi.nlm.nih.gov/pubmed/23856081 PubMed]  
*Vieler et al. (2012) Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779. Plos Genetics8(11):e1003064. [http://www.ncbi.nlm.nih.gov/pubmed?term=Plos%20Genetics%20Vieler%20Benning Pubmed]
*Farré EM, Weise SE (2012) The interactions between the circadian clock and primary metabolism. Curr Opin Plant Biol 15(3):293-300. [http://www.ncbi.nlm.nih.gov/pubmed/22305520 PubMed]
*Farre EM (2012) The regulation of plant growth by the circadian clock. Plant Biol 14(3):401-10.[http://www.ncbi.nlm.nih.gov/pubmed/22284304 PubMed]
*Nusinow DA, Helfer A, Hamilton EE, King JJ, Imaizumi T, Schultz TF, Farré EM, Kay SA (2011) The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth. Nature 475:398-402.[http://www.ncbi.nlm.nih.gov/pubmed/21753751 PubMed]
*Dong M, Farre EM, Thomashow MF (2011) CIRCADIAN CLOCK-ASSOCIATED 1 and LATE ELONGATED HYPOCOTYL regulate expression of the C-REPEAT BINDING FACTOR (CBF) pathway in Arabidopsis. PNAS 108(17):7241-6.[http://www.ncbi.nlm.nih.gov/pubmed/21471455 PubMed]




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[[Farre_Lab:Research |<h3><font style="color:#F8B603;">Announcements</font></h3>]]
[[Farre_Lab:Research |<h3><font style="color:#F8B603;">Announcements</font></h3>]]
* Sofia has joined us this summer as part of the [http://plantgenomics.msu.edu Plant Genomics Undergraduate Program at MSU]
*'''Congratulations Cameron for his Poster Award at the Spring University Undergraduate Research and Arts Forum '''!
* We are looking for rotation students interested in working on rhythms.
*[[Farre_Lab:Announcements | Group meeting, journal clubs, and seminars]]<br>
*[[Farre_Lab:Announcements | Group meeting, journal clubs, and seminars]]<br>


*[[Media:201404330-Map-MPSB.jpg| Our Lab has moved to the new Plant Molecular Science Building]]
 
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*[https://sites.google.com/a/msu.edu/research-teaching-msu/ Farre Lab NSF funded Teaching & Research program for pre-service teachers]
*[https://sites.google.com/a/msu.edu/research-teaching-msu/ Farre Lab NSF funded Teaching & Research program for pre-service teachers]
*[[Farre_Lab:Links|MSU Links]]
*[[Farre_Lab:Links|MSU Links]]
*[[Farre_Lab:Links|For Graduate students]]
*[[Farre_Lab:Links|Other Circadian Labs]]
*[[Farre_Lab:Links|Other Circadian Labs]]
*[http://plantgenomics.msu.edu Plant Genomics Undergraduate Program at MSU]
*[http://plantgenomics.msu.edu Plant Genomics Undergraduate Program at MSU]

Revision as of 06:31, 19 June 2017


Home        Research        Publications        People        Links        Teaching        Contact       


Research

Our goal is to understand how circadian clocks work and why they play such an important role in growth and stress responses. We study the regulation and role of circadian rhythms in plants and algae. Circadian rhythms are necessary for optimal growth and survival in several photosynthetic species, including Chlamydomonas rheinhardtii, Synechocystes sp. and Arabidopsis thaliana. Although circadian clocks share a basic architecture, they differ in their molecular components and appear not to be conserved between different taxa.

We work on the model plant Arabidopsis thaliana and have recently started analyzing rhythms in the heterokont alga Nannochloropsis oceanica.

read more...

Lab Members

Publications

  • Poliner E, Zienkiewicz K, Pullman J, Newton L, Benning C, Farré EM. A toolkit for Nannochloropsis oceanica CCMP1779 enables gene stacking and genetic engineering of the eicosapentaenoic acid pathway for enhanced fatty acid production. Plant Biotechnology Journal (in press) Pubmed
  • Zienkiewicz K, Zienkiewicz A, Poliner E, Du ZY, Vollheyde K, Herrfurth C, Marmon S, Farré EM, Feussner I, Benning C (2017). Nannochloropsis, a rich source of diacylglycerol acyltransferases for engineering of triacylglycerol content in different hosts. Biotechnology for Biofuels 10:8 Pubmed
  • Liu T, Newton L, Liu MJ, Shiu SH, Farre EM. A G-box-like motif is necessary for transcriptional regulation by circadian pseudo-response regulators in Arabidopsis(2016) Plant Physiology 170(1):528-39 PubMed.

NOTE: An updated corrected version of the manuscript has been published online (Jan. 20, 2016)

  • Poliner E, Panchy N, Newton L, Wu G, Lapinsky A, Bullard B, Zienkiewicz A, Benning C, Shiu S-H, Farré EM (2015) Transcriptional coordination of physiological responses in Nannochloropsis oceanica CCMP1779 under light/dark cycles. Plant J. 83(6):1097-113 Pubmed
  • Horak E, Farré EM (2015)The regulation of UV-B responses by the circadian clock. Plant Signaling and Behavior 10(5):e1000164.
  • Takeuchi T, Newton L, Burkhardt A, Mason S, Farre EM (2014) Light and the circadian clock mediate time specific changes in sensitivity to UV-B stress under light/dark cycles. Journal of Experimental Botany 65(20):6003-12 PubMed
  • Braun R, Farré EM, Schurr U, Matsubara S (2014) Effects of light and circadian clock on growth and chlorophyll accumulation of Nannochloropsis gaditana. Journal of Phycology 50(1):515–525 [1]
  • Liu T, Carlsson J, Takeuchi T, Newton L (2013) Direct regulation of abiotic responses by the Arabidopsis circadian clock component PRR7. Plant J 76(1):101-14PubMed
  • Farré EM, Liu T (2013) The PRR family of transcriptional regulators reflects the complexity and evolution of plant circadian clocks. Curr Opin Plant Biol 16(5):621-9PubMed


see complete list...

Announcements

  • Congratulations Cameron for his Poster Award at the Spring University Undergraduate Research and Arts Forum !
  • We are looking for rotation students interested in working on rhythms.
  • Group meeting, journal clubs, and seminars


Links

Funding

  • NSF
  • MSU
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