Fong:Protocols: Difference between revisions
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== Training Modules == | |||
*[[Fong: Required Safety Training Modules]] | |||
==Media and Reagents== | ==Media and Reagents== | ||
LB | *[[Fong:LB]] | ||
*[[Fong:Antibiotics]] - Antibiotic stock preparation | |||
CTFUD - Rich medium for ''C. thermocellum.'' Contact [[User:Christopher M Gowen|Chris]] for this protocol. | *[[Fong:IPTG]] - IPTG stock | ||
*CTFUD - Rich medium for ''C. thermocellum.'' Contact [[User:Christopher M Gowen|Chris]] for this protocol. | |||
[[Fong:MJ]] - Minimal medium for ''C. thermocellum'' | *[[Fong:MJ]] - Minimal medium for ''C. thermocellum'' | ||
*[[Fong:TFU]] - Medium for ''T. fusca'' | |||
[[Fong: | ==Equipment== | ||
*[[Fong:Spectrophotometry]] and plate reader use | |||
*[[Fong:HPLC]] | |||
==General techniques== | ==General techniques== | ||
[[Fong:Lab Basics]] - safety, waste/biohazard disposal, dishwashing/autoclaving, storage issues | *[[Fong:Lab Basics]] - safety, waste/biohazard disposal, dishwashing/autoclaving, storage issues | ||
*[[Fong:Cryogenic storage]] | |||
*[[Fong:Serum bottle anaerobic culture]] - General methodology for sterile anaerobic bacterial culture | |||
*[[Fong:Bradford protein assay]] - Colorimetric assay for protein concentration, useful for monitoring cell growth in the presence of insoluble substrates | |||
[[Fong:Cryogenic storage]] | *[[Fong:Electrocompetency]] | ||
*[[Fong:Electrotransformation]] of ''E. coli'' | |||
[[Fong:Serum bottle anaerobic culture]] - General methodology for sterile anaerobic bacterial culture | *[[Fong:Transformation]] of ''T. fusca'' | ||
*[[Fong:PCR]] | |||
[[Fong:Bradford protein assay]] - Colorimetric assay for protein concentration, useful for monitoring cell growth in the presence of insoluble substrates | *[[Fong:Quantification]] of free Cellobiose | ||
*[[Fong:MetModel]] - Analysis and Utilization of metabolic network modeling. | |||
[[Fong:Electrotransformation]] of ''E. coli'' | |||
[[Fong:Transformation]] of ''T. fusca'' | |||
==Nucleic acids== | ==Nucleic acids== | ||
*[[Fong:Plasmid preparation]] | |||
[[Fong:RNA gel electrophoresis/Denaturing]] | *[[Fong:RNA gel electrophoresis/Denaturing]] | ||
*[[Ethanol precipitation of nucleic acids]] - This consensus protocol provides a great overview. There is a microcentrifuge in the refrigerator in room 435. | |||
[[Ethanol precipitation of nucleic acids]] - This consensus protocol provides a great overview. There is a microcentrifuge in the refrigerator in room 435. | *[[Fong:DNA gel electrophoresis]] | ||
*[[Fong:BioBrick assembly]] | |||
[[Fong:DNA gel electrophoresis]] | |||
Latest revision as of 08:25, 30 April 2012
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Training Modules
Media and Reagents
- Fong:LB
- Fong:Antibiotics - Antibiotic stock preparation
- Fong:IPTG - IPTG stock
- CTFUD - Rich medium for C. thermocellum. Contact Chris for this protocol.
- Fong:MJ - Minimal medium for C. thermocellum
- Fong:TFU - Medium for T. fusca
Equipment
- Fong:Spectrophotometry and plate reader use
- Fong:HPLC
General techniques
- Fong:Lab Basics - safety, waste/biohazard disposal, dishwashing/autoclaving, storage issues
- Fong:Cryogenic storage
- Fong:Serum bottle anaerobic culture - General methodology for sterile anaerobic bacterial culture
- Fong:Bradford protein assay - Colorimetric assay for protein concentration, useful for monitoring cell growth in the presence of insoluble substrates
- Fong:Electrocompetency
- Fong:Electrotransformation of E. coli
- Fong:Transformation of T. fusca
- Fong:PCR
- Fong:Quantification of free Cellobiose
- Fong:MetModel - Analysis and Utilization of metabolic network modeling.
Nucleic acids
- Fong:Plasmid preparation
- Fong:RNA gel electrophoresis/Denaturing
- Ethanol precipitation of nucleic acids - This consensus protocol provides a great overview. There is a microcentrifuge in the refrigerator in room 435.
- Fong:DNA gel electrophoresis
- Fong:BioBrick assembly
