GRNmap Testing Report 16 Test Files 2015-06-01: Difference between revisions
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== | ==Test Conditions== | ||
*Date started: 2015-06-01 | *Date started: 2015-06-01 | ||
* | *Test Performed by: [[User:Tessa A. Morris| Tessa A. Morris]], [[Tessa A. Morris Electronic Lab Notebook| Electronic Notebook]] | ||
*Code Version: GRNmap-beta branch downloaded from Github at 10:43 am 2015-06-01 | |||
**Changes were made to the GRNmap-beta branch which was downloaded at 4:39 pm 2015-06-01 | **Changes were made to the GRNmap-beta branch which was downloaded at 4:39 pm 2015-06-01 | ||
**version at 9:37 am 2016-06-02 | |||
*MATLAB Version: 2014b | *MATLAB Version: 2014b | ||
* | *Computer on which the model was run: Row 2 4th from door | ||
== | ==Purpose== | ||
*The purpose was to create the sixteen different variations of the input sheet with a manageable number of genes and edges to use to test various versions of GRNmap. | |||
*[https://github.com/kdahlquist/GRNmap/issues/74#issuecomment-108097323 Issue 74] | |||
==Results== | |||
#4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_graph | #4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_graph | ||
#*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-0 fixP-0 graph.xlsx|4-genes_6-edges_artificial-data Sigmoidal_estimation_fixb-0_fixP-0_graph.xlsx ]] | #*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-0 fixP-0 graph.xlsx|4-genes_6-edges_artificial-data Sigmoidal_estimation_fixb-0_fixP-0_graph.xlsx ]] | ||
#*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-0 fixP-0 graph output.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_graph_output.xlsx]] | #*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-0 fixP-0 graph output.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_graph_output.xlsx]] | ||
#*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-0 fixP-0 graph output.mat|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_graph_output.mat]] | |||
#*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-0 fixP-0 graph plots.zip| 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_graph_plots]] | #*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-0 fixP-0 graph plots.zip| 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_graph_plots]] | ||
#4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_no-graph | #4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_no-graph | ||
#*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_no-graph.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_no-graph.xslx]] | #*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_no-graph.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_no-graph.xslx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_no- | #*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_no-graph_output.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_no-graph_output.xslx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_no-graph_output.mat|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_no-graph_output.mat]] | |||
#* No plots | #* No plots | ||
#4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_graph | #4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_graph | ||
#*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-0 fixP-1 graph.xlsx|4-genes_6-edges_artificial-data Sigmoidal_estimation_fixb-0_fixP-1_graph.xlsx ]] | #*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-0 fixP-1 graph.xlsx|4-genes_6-edges_artificial-data Sigmoidal_estimation_fixb-0_fixP-1_graph.xlsx ]] | ||
#*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-0 fixP-1 graph output.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_graph_output.xlsx]] | #*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-0 fixP-1 graph output.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_graph_output.xlsx]] | ||
#*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-0 fixP-1 graph output.mat|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_graph_output.mat]] | |||
#*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-0 fixP-1 graph plots.zip| 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_graph_plots]] | #*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-0 fixP-1 graph plots.zip| 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_graph_plots]] | ||
#4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_no-graph | #4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_no-graph | ||
#*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_no-graph.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_no-graph.xslx]] | #*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_no-graph.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_no-graph.xslx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_no- | #*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_no-graph_output.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_no-graph_output.xslx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_no-graph_output.mat|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_no-graph_output.mat]] | |||
#* No plots | #* No plots | ||
#4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-0_graph | #4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-0_graph | ||
#*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-1 fixP-0 graph.xlsx|4-genes_6-edges_artificial-data Sigmoidal_estimation_fixb-1_fixP-0_graph.xlsx ]] | #*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-1 fixP-0 graph.xlsx|4-genes_6-edges_artificial-data Sigmoidal_estimation_fixb-1_fixP-0_graph.xlsx ]] | ||
#*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-1 fixP-0 graph output.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-9_graph_output.xlsx]] | #*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-1 fixP-0 graph output.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-9_graph_output.xlsx]] | ||
#*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-1 fixP-0 graph output.mat|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-9_graph_output.mat]] | |||
#*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-1 fixP-0 graph plots.zip| 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-0_graph_plots]] | #*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-1 fixP-0 graph plots.zip| 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-0_graph_plots]] | ||
#4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-0_no-graph | #4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-0_no-graph | ||
#*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-1 fixP-0 no-graph.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-0_no-graph.xslx]] | #*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-1 fixP-0 no-graph.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-0_no-graph.xslx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-0_no- | #*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-0_no-graph_output.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-0_no-graph_output.xslx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-0_no-graph_output.mat|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-0_no-graph_output.mat]] | |||
#* No plots | #* No plots | ||
#4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_graph | #4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_graph | ||
#*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-1 fixP-1 graph.xlsx|4-genes_6-edges_artificial-data Sigmoidal_estimation_fixb-1_fixP-1_graph.xlsx ]] | #*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-1 fixP-1 graph.xlsx|4-genes_6-edges_artificial-data Sigmoidal_estimation_fixb-1_fixP-1_graph.xlsx ]] | ||
#*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-1 fixP-1 graph output.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_graph_output.xlsx]] | #*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-1 fixP-1 graph output.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_graph_output.xlsx]] | ||
#*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-1 fixP-1 graph output.mat|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_graph_output.mat]] | |||
#*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-1 fixP-1 graph plots.zip| 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_graph_plots]] | #*[[Media:4-genes 6-edges artificial-data Sigmoidal estimation fixb-1 fixP-1 graph plots.zip| 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_graph_plots]] | ||
#4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_no-graph | #4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_no-graph | ||
#*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_no-graph.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_no-graph.xslx]] | #*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_no-graph.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_no-graph.xslx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_no- | #*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_no-graph_output.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_no-graph_output.xslx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_no-graph_output.mat|4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_no-graph_output.mat]] | |||
#* No plots | #* No plots | ||
#4-genes_6-edges_artificial-data_Sigmoidal_forward_graph | #4-genes_6-edges_artificial-data_Sigmoidal_forward_graph | ||
#*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_forward_graph.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_forward_graph.xlsx]] | #*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_forward_graph.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_forward_graph.xlsx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_forward_graph_output.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_forward_graph_output.xlsx]] | #*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_forward_graph_output.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_forward_graph_output.xlsx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_forward_graph_output.mat|4-genes_6-edges_artificial-data_Sigmoidal_forward_graph_output.mat]] | |||
#*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_forward_graph_plots.zip|4-genes_6-edges_artificial-data_Sigmoidal_forward_graph_plots]] | #*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_forward_graph_plots.zip|4-genes_6-edges_artificial-data_Sigmoidal_forward_graph_plots]] | ||
#4-genes_6-edges_artificial-data_Sigmoidal_forward_no-graph | #4-genes_6-edges_artificial-data_Sigmoidal_forward_no-graph | ||
#*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_forward_no-graph.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_forward_no-graph.xlsx]] | #*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_forward_no-graph.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_forward_no-graph.xlsx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_forward_no-graph_output.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_forward_no-graph_output.xlsx]] | #*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_forward_no-graph_output.xlsx|4-genes_6-edges_artificial-data_Sigmoidal_forward_no-graph_output.xlsx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_Sigmoidal_forward_no-graph_output.mat|4-genes_6-edges_artificial-data_Sigmoidal_forward_no-graph_output.mat]] | |||
#*No plots | #*No plots | ||
#4-genes_6-edges_artificial-data_MM_estimation_fixP-1_graph | #4-genes_6-edges_artificial-data_MM_estimation_fixP-1_graph | ||
#*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-1_graph.xlsx|4-genes_6-edges_artificial-data_MM_estimation_fixP-1_graph.xlsx]] | #*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-1_graph.xlsx|4-genes_6-edges_artificial-data_MM_estimation_fixP-1_graph.xlsx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-1_graph_output.xlsx|4-genes_6-edges_artificial-data_MM_estimation_fixP-1_graph_output.xlsx]] | #*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-1_graph_output.xlsx|4-genes_6-edges_artificial-data_MM_estimation_fixP-1_graph_output.xlsx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-1_graph_output.mat|4-genes_6-edges_artificial-data_MM_estimation_fixP-1_graph_output.mat]] | |||
#*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-1_graph_plots.zip|4-genes_6-edges_artificial-data_MM_estimation_fixP-1_graph_plots]] | #*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-1_graph_plots.zip|4-genes_6-edges_artificial-data_MM_estimation_fixP-1_graph_plots]] | ||
#4-genes_6-edges_artificial-data_MM_estimation_fixP-1_no-graph | #4-genes_6-edges_artificial-data_MM_estimation_fixP-1_no-graph | ||
#*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-1_no-graph.xlsx|4-genes_6-edges_artificial-data_MM_estimation_fixP-1_no-graph.xlsx]] | #*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-1_no-graph.xlsx|4-genes_6-edges_artificial-data_MM_estimation_fixP-1_no-graph.xlsx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-1_no-graph_output.xlsx|4-genes_6-edges_artificial-data_MM_estimation_fixP-1_no-graph_output.xlsx]] | #*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-1_no-graph_output.xlsx|4-genes_6-edges_artificial-data_MM_estimation_fixP-1_no-graph_output.xlsx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-1_no-graph_output.mat|4-genes_6-edges_artificial-data_MM_estimation_fixP-1_no-graph_output.mat]] | |||
#*No plots | #*No plots | ||
#4-genes_6-edges_artificial-data_MM_estimation_fixP-0_graph | #4-genes_6-edges_artificial-data_MM_estimation_fixP-0_graph | ||
#*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-0_graph.xlsx|4-genes_6-edges_artificial-data_MM_estimation_fixP-0_graph.xlsx]] | #*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-0_graph.xlsx|4-genes_6-edges_artificial-data_MM_estimation_fixP-0_graph.xlsx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-0_graph_output.xlsx|4-genes_6-edges_artificial-data_MM_estimation_fixP-0_graph_output.xlsx]] | #*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-0_graph_output.xlsx|4-genes_6-edges_artificial-data_MM_estimation_fixP-0_graph_output.xlsx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-0_graph_output.mat|4-genes_6-edges_artificial-data_MM_estimation_fixP-0_graph_output.mat]] | |||
#*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-0_graph_plots.zip|4-genes_6-edges_artificial-data_MM_estimation_fixP-0_graph_plots]] | #*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-0_graph_plots.zip|4-genes_6-edges_artificial-data_MM_estimation_fixP-0_graph_plots]] | ||
#4-genes_6-edges_artificial-data_MM_estimation_fixP-0_no-graph | #4-genes_6-edges_artificial-data_MM_estimation_fixP-0_no-graph | ||
#*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-0_no-graph.xlsx|4-genes_6-edges_artificial-data_MM_estimation_fixP-0_no-graph.xlsx]] | #*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-0_no-graph.xlsx|4-genes_6-edges_artificial-data_MM_estimation_fixP-0_no-graph.xlsx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-0_no-graph_output.xlsx|4-genes_6-edges_artificial-data_MM_estimation_fixP-0_no-graph_output.xlsx]] | #*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-0_no-graph_output.xlsx|4-genes_6-edges_artificial-data_MM_estimation_fixP-0_no-graph_output.xlsx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_MM_estimation_fixP-0_no-graph_output.mat|4-genes_6-edges_artificial-data_MM_estimation_fixP-0_no-graph_output.mat]] | |||
#*No plots | #*No plots | ||
#4-genes_6-edges_artificial-data_MM_forward_graph | #4-genes_6-edges_artificial-data_MM_forward_graph | ||
#*[[Media:4-genes_6-edges_artificial-data_MM_forward_graph.xlsx|4-genes_6-edges_artificial-data_MM_forward_graph.xlsx]] | #*[[Media:4-genes_6-edges_artificial-data_MM_forward_graph.xlsx|4-genes_6-edges_artificial-data_MM_forward_graph.xlsx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_MM_forward_graph_output.xlsx|4-genes_6-edges_artificial-data_MM_forward_graph_output.xlsx]] | #*[[Media:4-genes_6-edges_artificial-data_MM_forward_graph_output.xlsx|4-genes_6-edges_artificial-data_MM_forward_graph_output.xlsx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_MM_forward_graph_output.mat|4-genes_6-edges_artificial-data_MM_forward_graph_output.mat]] | |||
#*[[Media:4-genes_6-edges_artificial-data_MM_forward_graph_plots.zip|4-genes_6-edges_artificial-data_MM_forward_graph_plots]] | #*[[Media:4-genes_6-edges_artificial-data_MM_forward_graph_plots.zip|4-genes_6-edges_artificial-data_MM_forward_graph_plots]] | ||
#4-genes_6-edges_artificial-data_MM_forward_no-graph | #4-genes_6-edges_artificial-data_MM_forward_no-graph | ||
#*[[Media:4-genes_6-edges_artificial-data_MM_forward_no-graph.xlsx|4-genes_6-edges_artificial-data_MM_forward_no-graph.xlsx]] | #*[[Media:4-genes_6-edges_artificial-data_MM_forward_no-graph.xlsx|4-genes_6-edges_artificial-data_MM_forward_no-graph.xlsx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_MM_forward_no-graph_output.xlsx|4-genes_6-edges_artificial-data_MM_forward_no-graph_output.xlsx]] | #*[[Media:4-genes_6-edges_artificial-data_MM_forward_no-graph_output.xlsx|4-genes_6-edges_artificial-data_MM_forward_no-graph_output.xlsx]] | ||
#*[[Media:4-genes_6-edges_artificial-data_MM_forward_no-graph_output.mat|4-genes_6-edges_artificial-data_MM_forward_no-graph_output.mat]] | |||
#*No plots | #*No plots | ||
*Checklist for the output sheet is [[Media:Output sheet checklist 20150602 TM.xlsx| here]]. | |||
==Discussion== | |||
*For Sigmoidal_estimation: | |||
**When fixP-0 the optimized_production_rates sheet was produced; fixP-1 no production rates sheet was produced. | |||
**When fixb-0 the optimized_threshold_b sheet was produced; fixb-1 no optimized_threshold_b sheet was produced | |||
*For Sigmoidal_forward: | |||
**optimized_production_rates sheet was produced; optimized_threshold_b sheet was not | |||
*For Michaelis Menten | |||
* | **No optimized_threshold_b | ||
**optimized_production_rates sheet was produced only when fixP-0 | |||
*The wt_log2_optimized_expression, wt_sigmas, dcin5_log2_optimized_expression, and dcin5_sigmas were produced for all inputs | |||
*optimization_diagnostics was not produced for any of the inputs | |||
[[Category:Dahlquist Lab]] | |||
[[Category: GRNmap]] | |||
Latest revision as of 14:31, 2 June 2015
Test Conditions
- Date started: 2015-06-01
- Test Performed by: Tessa A. Morris, Electronic Notebook
- Code Version: GRNmap-beta branch downloaded from Github at 10:43 am 2015-06-01
- Changes were made to the GRNmap-beta branch which was downloaded at 4:39 pm 2015-06-01
- version at 9:37 am 2016-06-02
- MATLAB Version: 2014b
- Computer on which the model was run: Row 2 4th from door
Purpose
- The purpose was to create the sixteen different variations of the input sheet with a manageable number of genes and edges to use to test various versions of GRNmap.
- Issue 74
Results
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_graph
- 4-genes_6-edges_artificial-data Sigmoidal_estimation_fixb-0_fixP-0_graph.xlsx
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_graph_output.xlsx
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_graph_output.mat
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_graph_plots
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-0_no-graph
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_graph
- 4-genes_6-edges_artificial-data Sigmoidal_estimation_fixb-0_fixP-1_graph.xlsx
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_graph_output.xlsx
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_graph_output.mat
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_graph_plots
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-0_fixP-1_no-graph
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-0_graph
- 4-genes_6-edges_artificial-data Sigmoidal_estimation_fixb-1_fixP-0_graph.xlsx
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-9_graph_output.xlsx
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-9_graph_output.mat
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-0_graph_plots
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-0_no-graph
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_graph
- 4-genes_6-edges_artificial-data Sigmoidal_estimation_fixb-1_fixP-1_graph.xlsx
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_graph_output.xlsx
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_graph_output.mat
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_graph_plots
- 4-genes_6-edges_artificial-data_Sigmoidal_estimation_fixb-1_fixP-1_no-graph
- 4-genes_6-edges_artificial-data_Sigmoidal_forward_graph
- 4-genes_6-edges_artificial-data_Sigmoidal_forward_no-graph
- 4-genes_6-edges_artificial-data_MM_estimation_fixP-1_graph
- 4-genes_6-edges_artificial-data_MM_estimation_fixP-1_no-graph
- 4-genes_6-edges_artificial-data_MM_estimation_fixP-0_graph
- 4-genes_6-edges_artificial-data_MM_estimation_fixP-0_no-graph
- 4-genes_6-edges_artificial-data_MM_forward_graph
- 4-genes_6-edges_artificial-data_MM_forward_no-graph
- Checklist for the output sheet is here.
Discussion
- For Sigmoidal_estimation:
- When fixP-0 the optimized_production_rates sheet was produced; fixP-1 no production rates sheet was produced.
- When fixb-0 the optimized_threshold_b sheet was produced; fixb-1 no optimized_threshold_b sheet was produced
- For Sigmoidal_forward:
- optimized_production_rates sheet was produced; optimized_threshold_b sheet was not
- For Michaelis Menten
- No optimized_threshold_b
- optimized_production_rates sheet was produced only when fixP-0
- The wt_log2_optimized_expression, wt_sigmas, dcin5_log2_optimized_expression, and dcin5_sigmas were produced for all inputs
- optimization_diagnostics was not produced for any of the inputs