Galaxy at MIT
From OpenWetWare
| HOME -- | SEQUENCING -- | LIBRARY PREP -- | HIGH-THROUGHPUT -- | COMPUTING -- | OTHER TECHNOLOGY |
- Galaxy at MIT is a GALAXY INSTANCE installed at MIT.
Project Timelines
| Timelines | Plan | Status | Comments |
|---|---|---|---|
| Jul 29 | Galaxy Setup: Finish tweaking the installation and configuration of Galaxy at MIT instance. | (1) The solution for data transfer among user computer, data server and Galaxy server; (2) The solution for data maintenance on Galaxy server; (3) Local or network source code repository. | Add your comment |
| Aug 1 | Galaxy and GenePattern: Comparison of features and analytical pipelines in Galaxy and GenePattern for better performance and usability. | Ongoing | Add your comment |
| Aug 5 | Chip-Seq Pipeline: Test the Chip-Seq pipeline in Galaxy. | Ongoing | Add your comment |
| Aug 12 | Chip-Seq Pipeline: Start some of the analyses on Boyer Lab data using Galaxy. | Ongoing | Add your comment |
| Aug 31 | Chip-Seq Pipeline: Make the Chip-Seq analytical pipeline available. | Ongoing | Add your comment |
| Oct 31 | RNA-Seq Pipeline: Test and implement RNA-Seq pipeline. | Ongoing | Add your comment |
| Feb 31 | Other Pipelines: Test and implement some other pipelines such as CNV, whole genome etc in the interval of every two months. | Ongoing | Add your comment |
| Jun 31 | BioMicroWare: Most pipelines are investigated and implemented with iterative improvements and enhancements. | Ongoing | Add your comments |
Galaxy Installation and Configuration
Data uploading
The solution for data transfer among user computer, data server and Galaxy server.
Data maintenance
The solution for data maintenance on Galaxy server.
Data deletion
The script for deleting datasets stored on Galaxy server after a user's history and datasets have been deleted using Galaxy web interface.
