Gerber:Publications

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Halbach A, Zhang H, Wengi A, Jablonska Z, Gruber IML, Halbeisen RE, Dehé PM, Kemmeren P, Holstege F, Géli V, Gerber AP & Dichtl B. Cotranslational assembly of the yeast SET1C histone methyltransferase complex. EMBO J 2009 /in press/ Kanitz A and Gerber AP. Circuitry of mRNA regulation. Wiley Interdisciplinary Reviews: Systems Biology and Medicine 2009 /in press/ San Paolo S, Vanacova S, Schenk L, Scherrer T, Blank D, Keller W, and Gerber AP. Distinct roles of non-canonical poly(A) polymerases in RNA metabolism. PLoS Genet. 2009 Jul;5(7):e1000555. DOI:10.1371/journal.pgen.1000555 | Halbeisen RE and Gerber AP. Stress-dependent coordination of transcriptome and translatome in yeast. PLoS Biol. 2009 May;7(5):e1000105. DOI:10.1371/journal.pbio.1000105 | Halbeisen RE, Scherrer T, and Gerber AP. Affinity purification of ribosomes to access the translatome. Methods. 2009 Jul;48(3):306-10. DOI:10.1016/j.ymeth.2009.04.003 | Hogan DJ, Riordan DP, Gerber AP, Herschlag D, and Brown PO. Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol. 2008 Oct 28;6(10):e255. DOI:10.1371/journal.pbio.0060255 | Hasegawa Y, Irie K, and Gerber AP. Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast. RNA. 2008 Nov;14(11):2333-47. DOI:10.1261/rna.1016508 | Galgano A, Forrer M, Jaskiewicz L, Kanitz A, Zavolan M, and Gerber AP. Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system. PLoS One. 2008 Sep 8;3(9):e3164. DOI:10.1371/journal.pone.0003164 | Muraro NI, Weston AJ, Gerber AP, Luschnig S, Moffat KG, and Baines RA. Pumilio binds para mRNA and requires Nanos and Brat to regulate sodium current in Drosophila motoneurons. J Neurosci. 2008 Feb 27;28(9):2099-109. DOI:10.1523/JNEUROSCI.5092-07.2008 | Halbeisen RE, Galgano A, Scherrer T, and Gerber AP. Post-transcriptional gene regulation: from genome-wide studies to principles. Cell Mol Life Sci. 2008 Mar;65(5):798-813. DOI:10.1007/s00018-007-7447-6 | Gerber AP, Luschnig S, Krasnow MA, Brown PO, and Herschlag D. Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster. Proc Natl Acad Sci U S A. 2006 Mar 21;103(12):4487-92. DOI:10.1073/pnas.0509260103 | Gerber AP, Herschlag D, and Brown PO. Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast. PLoS Biol. 2004 Mar;2(3):E79. DOI:10.1371/journal.pbio.0020079 | Shepard KA, Gerber AP, Jambhekar A, Takizawa PA, Brown PO, Herschlag D, DeRisi JL, and Vale RD. Widespread cytoplasmic mRNA transport in yeast: identification of 22 bud-localized transcripts using DNA microarray analysis. Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11429-34. DOI:10.1073/pnas.2033246100 | Wolf J, Gerber AP, and Keller W. tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli. EMBO J. 2002 Jul 15;21(14):3841-51. DOI:10.1093/emboj/cdf362 | Gerber AP and Keller W. RNA editing by base deamination: more enzymes, more targets, new mysteries. Trends Biochem Sci. 2001 Jun;26(6):376-84. DOI:10.1016/s0968-0004(01)01827-8 | Paupard M-C, O'Connell MA, Gerber AP, and Zukin RS. Patterns of developmental expression of the RNA editing enzyme rADAR2. Neuroscience. 2000;95(3):869-79. DOI:10.1016/s0306-4522(99)00431-5 | Keegan LP, Gerber AP, Brindle J, Leemans R, Gallo A, Keller W, and O'Connell MA. The properties of a tRNA-specific adenosine deaminase from Drosophila melanogaster support an evolutionary link between pre-mRNA editing and tRNA modification. Mol Cell Biol. 2000 Feb;20(3):825-33. DOI:10.1128/MCB.20.3.825-833.2000 | Gerber AP and Keller W. An adenosine deaminase that generates inosine at the wobble position of tRNAs. Science. 1999 Nov 5;286(5442):1146-9. DOI:10.1126/science.286.5442.1146 | Maas S, Gerber AP, and Rich A. Identification and characterization of a human tRNA-specific adenosine deaminase related to the ADAR family of pre-mRNA editing enzymes. Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):8895-900. DOI:10.1073/pnas.96.16.8895 | Keller W, Wolf J, and Gerber A. Editing of messenger RNA precursors and of tRNAs by adenosine to inosine conversion. FEBS Lett. 1999 Jun 4;452(1-2):71-6. DOI:10.1016/s0014-5793(99)00590-6 | Gerber A, Grosjean H, Melcher T, and Keller W. Tad1p, a yeast tRNA-specific adenosine deaminase, is related to the mammalian pre-mRNA editing enzymes ADAR1 and ADAR2. EMBO J. 1998 Aug 17;17(16):4780-9. DOI:10.1093/emboj/17.16.4780 | O'Connell MA, Gerber A, and Keegan LP. Purification of native and recombinant double-stranded RNA-specific adenosine deaminases. Methods. 1998 May;15(1):51-62. DOI:10.1006/meth.1998.0605 | Gerber A, O'Connell MA, and Keller W. Two forms of human double-stranded RNA-specific editase 1 (hRED1) generated by the insertion of an Alu cassette. RNA. 1997 May;3(5):453-63. O'Connell MA, Gerber A, and Keller W. Purification of human double-stranded RNA-specific editase 1 (hRED1) involved in editing of brain glutamate receptor B pre-mRNA. J Biol Chem. 1997 Jan 3;272(1):473-8. DOI:10.1074/jbc.272.1.473 |