Gist

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This presentation from the BioMIBLab Summer 2006 Workshop is an analysis bioinformatics tool.

Synopsis

Gist is a set of command line programs written in C
  • Primary programs
SVM and KPCA
  • Auxiliary programs
Ranking and feature selection
  • Web interface for the SVM component

Features

  • Normalizations
Column (sample) mean center
Column (sample) z-score
  • Classifiers
SVM
  • Data Representation
Text files
HTML output
  • Ranking Methods
Fisher criterion
T-test
SAM
Mann-Whitney
Welch t-test


Full Presentation

Gist PowerPoint Presentation

Links

Gist Homepage

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