Gresham:Publications

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Publications

Papers can be accessed from the publisher by clicking on the reference. If you cannot access the paper please contact me directly for a copy of the paper.

1. Ehrenreich IM, Torabi N, Jia Y, Kent J, Martis S, Shapiro JA, Gresham D, Caudy AA, and Kruglyak L. Dissection of genetically complex traits with extremely large pools of yeast segregants. Nature. 2010 Apr 15;464(7291):1039-42. DOI:10.1038/nature08923 |
1. Gresham D, Boer VM, Caudy A, Ziv N, Brandt NJ, Storey JD, and Botstein D. System-level analysis of genes and functions affecting survival during nutrient starvation in Saccharomyces cerevisiae. Genetics. 2011 Jan;187(1):299-317. DOI:10.1534/genetics.110.120766 |
2. Gresham D, Curry B, Ward A, Gordon DB, Brizuela L, Kruglyak L, and Botstein D. Optimized detection of sequence variation in heterozygous genomes using DNA microarrays with isothermal-melting probes. Proc Natl Acad Sci U S A. 2010 Jan 26;107(4):1482-7. DOI:10.1073/pnas.0913883107 |
2. Gresham D, Usaite R, Germann SM, Lisby M, Botstein D, and Regenberg B. Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus. Proc Natl Acad Sci U S A. 2010 Oct 26;107(43):18551-6. DOI:10.1073/pnas.1014023107 |
3. Ho CH, Magtanong L, Barker SL, Gresham D, Nishimura S, Natarajan P, Koh JLY, Porter J, Gray CA, Andersen RJ, Giaever G, Nislow C, Andrews B, Botstein D, Graham TR, Yoshida M, and Boone C. A molecular barcoded yeast ORF library enables mode-of-action analysis of bioactive compounds. Nat Biotechnol. 2009 Apr;27(4):369-77. DOI:10.1038/nbt.1534 |
4. Airoldi EM, Huttenhower C, Gresham D, Lu C, Caudy AA, Dunham MJ, Broach JR, Botstein D, and Troyanskaya OG. Predicting cellular growth from gene expression signatures. PLoS Comput Biol. 2009 Jan;5(1):e1000257. DOI:10.1371/journal.pcbi.1000257 |
5. Gresham D, Desai MM, Tucker CM, Jenq HT, Pai DA, Ward A, DeSevo CG, Botstein D, and Dunham MJ. The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast. PLoS Genet. 2008 Dec;4(12):e1000303. DOI:10.1371/journal.pgen.1000303 |
6. Gresham D and Kruglyak L. Rise of the machines. PLoS Genet. 2008 Aug 1;4(8):e1000134. DOI:10.1371/journal.pgen.1000134 |
7. Gresham D, Dunham MJ, and Botstein D. Comparing whole genomes using DNA microarrays. Nat Rev Genet. 2008 Apr;9(4):291-302. DOI:10.1038/nrg2335 |
8. Brauer MJ, Huttenhower C, Airoldi EM, Rosenstein R, Matese JC, Gresham D, Boer VM, Troyanskaya OG, and Botstein D. Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast. Mol Biol Cell. 2008 Jan;19(1):352-67. DOI:10.1091/mbc.e07-08-0779 |
9. Schacherer J, Ruderfer DM, Gresham D, Dolinski K, Botstein D, and Kruglyak L. Genome-wide analysis of nucleotide-level variation in commonly used Saccharomyces cerevisiae strains. PLoS One. 2007 Mar 28;2(3):e322. DOI:10.1371/journal.pone.0000322 |
10. Gabriel A, Dapprich J, Kunkel M, Gresham D, Pratt SC, and Dunham MJ. Global mapping of transposon location. PLoS Genet. 2006 Dec 15;2(12):e212. DOI:10.1371/journal.pgen.0020212 |
11. Heck JA, Gresham D, Botstein D, and Alani E. Accumulation of recessive lethal mutations in Saccharomyces cerevisiae mlh1 mismatch repair mutants is not associated with gross chromosomal rearrangements. Genetics. 2006 Sep;174(1):519-23. DOI:10.1534/genetics.106.059311 |
12. Gresham D, Ruderfer DM, Pratt SC, Schacherer J, Dunham MJ, Botstein D, and Kruglyak L. Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray. Science. 2006 Mar 31;311(5769):1932-6. DOI:10.1126/science.1123726 |
13. Morar B, Gresham D, Angelicheva D, Tournev I, Gooding R, Guergueltcheva V, Schmidt C, Abicht A, Lochmuller H, Tordai A, Kalmar L, Nagy M, Karcagi V, Jeanpierre M, Herczegfalvi A, Beeson D, Venkataraman V, Warwick Carter K, Reeve J, de Pablo R, Kucinskas V, and Kalaydjieva L. Mutation history of the roma/gypsies. Am J Hum Genet. 2004 Oct;75(4):596-609. DOI:10.1086/424759 |
14. Zhivotovsky LA, Underhill PA, Cinnioğlu C, Kayser M, Morar B, Kivisild T, Scozzari R, Cruciani F, Destro-Bisol G, Spedini G, Chambers GK, Herrera RJ, Yong KK, Gresham D, Tournev I, Feldman MW, and Kalaydjieva L. The effective mutation rate at Y chromosome short tandem repeats, with application to human population-divergence time. Am J Hum Genet. 2004 Jan;74(1):50-61. DOI:10.1086/380911 |
15. Gresham D. Reversing Babel with GO. Nat Genet. 2002 Jul;31(3):230. DOI:10.1038/ng0702-230 |
16. Gresham D, Morar B, Underhill PA, Passarino G, Lin AA, Wise C, Angelicheva D, Calafell F, Oefner PJ, Shen P, Tournev I, de Pablo R, Kuĉinskas V, Perez-Lezaun A, Marushiakova E, Popov V, and Kalaydjieva L. Origins and divergence of the Roma (gypsies). Am J Hum Genet. 2001 Dec;69(6):1314-31. DOI:10.1086/324681 |
17. Kalaydjieva L, Gresham D, and Calafell F. Genetic studies of the Roma (Gypsies): a review. BMC Med Genet. 2001;2:5. DOI:10.1186/1471-2350-2-5 |
18. Chandler D, Angelicheva D, Heather L, Gooding R, Gresham D, Yanakiev P, de Jonge R, Baas F, Dye D, Karagyozov L, Savov A, Blechschmidt K, Keats B, Thomas PK, King RH, Starr A, Nikolova A, Colomer J, Ishpekova B, Tournev I, Urtizberea JA, Merlini L, Butinar D, Chabrol B, Voit T, Baethmann M, Nedkova V, Corches A, and Kalaydjieva L. Hereditary motor and sensory neuropathy--Lom (HMSNL): refined genetic mapping in Romani (Gypsy) families from several European countries. Neuromuscul Disord. 2000 Dec;10(8):584-91. DOI:10.1016/s0960-8966(00)00148-6 |
19. Kalaydjieva L, Gresham D, Gooding R, Heather L, Baas F, de Jonge R, Blechschmidt K, Angelicheva D, Chandler D, Worsley P, Rosenthal A, King RH, and Thomas PK. N-myc downstream-regulated gene 1 is mutated in hereditary motor and sensory neuropathy-Lom. Am J Hum Genet. 2000 Jul;67(1):47-58. DOI:10.1086/302978 |