Gresham:Publications

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Publications

1. Gresham D, Boer D, Caudy A, Storey JD, Botstein D. System-level analysis of genes and functions affecting survival during nutrient starvation in Saccharomyces cerevisiae. Genetics (published online Oct13, 2010. To appear in print Jan 2011).

2. Gresham D, Usaite R, Germann SM, Lisby M, Botstein D and Regenberg B Adaptation to diverse nitrogen limited environments by deletion or extrachromosomal element formation of the GAP1 locus. PNAS (2010): 107(43): 18551-6.

3. Ehrenreich IM, Torabi N, Jia Y, Kent J, Martis S, Shapiro JA, Gresham D, Caudy AA, and Kruglyak L. Dissection of genetically complex traits with extremely large pools of yeast segregants. Nature, 2010. 464 (7291): p. 1039-1042.

4. Gresham D, Curry B, Ward A, Gordon DB, Brizuela L, Kruglyak L, Botstein D. Optimized detection of sequence variation in heterozygous genomes using DNA microarrays with isothermal-melting probes. PNAS Jan;26;107(4):1482-7. Epub 2010 Jan 8.

5. Ho CH, Magtanong L, Barker SL, Gresham D, Nishimura S, Natarajan P, Koh JL, Porter J, Gray CA, Andersen RJ, Giaever G, Nislow C, Andrews B, Botstein D, Graham TR, Yoshida M, Boone C. A molecular barcoded yeast ORF library enables mode-of-action analysis of bioactive compounds. Nature Biotechnology. 2009 Apr;27(4):369-77

6. Airoldi EM, Huttenhower C, Gresham D, Lu C, Caudy AA, Dunham MJ, Broach JR, Botstein D, and Troyanskaya OG. Predicting cellular growth from gene expression signatures PLoS Computational Biology. 2009 Jan;5(1):e1000257.

7. Gresham D., Desai, M.M., Tucker, C.M., Jenq, H.T., Pai, D.A., Ward, A., DeSevo, C.G., Botstein, D., and Dunham, M.J. The Repertoire and Dynamics of Evolutionary Adaptations to Controlled Nutrient-Limited Environments in Yeast. PLoS Genetics. 2008 Dec;4(12):e1000303.

8. Gresham D, Kruglyak L, "Rise of the machines" PLoS Genetics. 2008 Aug 1;4(8):e100013

9. Gresham D, Dunham M, Botstein D, “Comparing Whole Genomes with DNA Microarrays” Nature Reviews Genetics (2008) Apr;9(4):291-302.

10. Brauer MJ, Huttenhower, C, Airoldi, EM, Rosenstein R, Matese JC, Gresham D, Boer VM, Troyanskaya OG, Botstein D, “Coordination of Growth Rate, Cell Cycle, Stress Response and Metabolic Activity in Yeast” Molecular Biology of the Cell. (2008) Jan;19(1):352-67. Epub 2007 Oct 24.

11. Schacherer J, Ruderfer D, Gresham D, Dolinski K, Botstein D, Kruglyak L, “Genome-wide analysis of nucleotide-level variation in commonly used Saccharomyces cerevisiae strains” PLoS ONE. (2007) Mar 28;2(3):e322.

12. Gresham D, Ruderfer D, Pratt, S, Schacherer J, Dunham M, Botstein D, Kruglyak L, “Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray” Science. 31;311:1932-6 (2006)

13. Gabriel A, Dapprich J, Kunkel M, Gresham D, Pratt S, Dunham M., "Global Mapping of Transposon Location." PLoS Genetics (2006) Dec 15;2(12):e212.

14. Heck JA, Gresham D, Botstein D, Alani E, “Accumulation of recessive lethal mutations in Saccharomyces cerevisiae mlh1 mismatch repair mutants is not associated with gross chromosomal rearrangements” Genetics 174, 519-23 (2006).

15. Morar B, Gresham D, Angelicheva D, Tournev I, Gooding R, Guergueltcheva V, Schmidt C, Abicht A, Lochmuller H, Tordai A, Kalmar L, Nagy M, Karcagi V, Jeanpierre M, Herczegfalvi A, Beeson D, Venkataraman V, Warwick Carter K, ReeveJ, de Pablo R, Kucinskas V, Kalaydjieva L, “Mutation history of the Roma/Gypsies” Am J Hum Genet. 75(4):596-609 (2004).

16. Zhivotovsky LA, Underhill PA, Cinnioglu C, Kayser M, Morar B, Kivisild T,Scozzari R, Cruciani F, Destro-Bisol G, Spedini G, Chambers GK, Herrera RJ, Yong KK, Gresham D, Tournev I, Feldman MW, Kalaydjieva L, “The effective mutation rate at Y chromosome short tandem repeats, with application to human population-divergence time.” Am J Hum Genet. 74(1):50-61 (2004).

17. Gresham D, Morar B, Underhill PA, Passarino G, Lin AA, Wise C, Angelicheva D, Calafell F, Oefner PJ, Shen P, Tournev I, de Pablo R, Kucinskas V, Perez-Lezaun A, Marushiakova E, Popov V, Kalaydjieva L, “Origins and divergence of the Roma (Gypsies)” Am J Hum Genet. 69(6):1314-31 (2001).

18. Kalaydjieva L, Gresham D, Calafell F, “Genetic studies of the Roma (Gypsies): a review.” BMC Med Genet. 2(1):5 (2001).

19. Kalaydjieva L, Gresham D, Gooding R, Heather L, Baas F, de Jonge R, Blechschmidt K, Angelicheva D, Chandler D, Worsley P, Rosenthal A, King RH, Thomas PK., “N-myc downstream-regulated gene 1 is mutated in hereditary motor and sensory neuropathy-Lom” Am J Hum Genet. 67(1):47-58 (2000).

20. Chandler D, Angelicheva D, Heather L, Gooding R, Gresham D, Yanakiev P, de Jonge R, Baas F, Dye D, Karagyozov L, Savov A, Blechschmidt K, Keats B, Thomas PK, King RH, Starr A, Nikolova A, Colomer J, Ishpekova B, Tournev I, Urtizberea JA, Merlini L, Butinar D, Chabrol B, Voit T, Baethmann M, Nedkova V, Corches A, Kalaydjieva L, “Hereditary motor and sensory neuropathy--Lom (HMSNL): refined genetic mapping in Romani (Gypsy) families from several European countries” Neuromuscul Disord. 2000 Dec;10(8):584-91.



Papers can be accessed from the publisher by clicking on the reference. If you cannot access the paper please contact me directly for a copy of the paper.

  1. Gresham D, Boer VM, Caudy A, Ziv N, Brandt NJ, Storey JD, and Botstein D. . pmid:20944018. PubMed HubMed [Paper1]
  2. Gresham D, Usaite R, Germann SM, Lisby M, Botstein D, and Regenberg B. . pmid:20937885. PubMed HubMed [Paper2]
  3. Ehrenreich IM, Torabi N, Jia Y, Kent J, Martis S, Shapiro JA, Gresham D, Caudy AA, and Kruglyak L. . pmid:20393561. PubMed HubMed [Paper3]
  4. Gresham D, Curry B, Ward A, Gordon DB, Brizuela L, Kruglyak L, and Botstein D. . pmid:20080586. PubMed HubMed [Paper4]
  5. Ho CH, Magtanong L, Barker SL, Gresham D, Nishimura S, Natarajan P, Koh JL, Porter J, Gray CA, Andersen RJ, Giaever G, Nislow C, Andrews B, Botstein D, Graham TR, Yoshida M, and Boone C. . pmid:19349972. PubMed HubMed [Paper5]
  6. Airoldi EM, Huttenhower C, Gresham D, Lu C, Caudy AA, Dunham MJ, Broach JR, Botstein D, and Troyanskaya OG. . pmid:19119411. PubMed HubMed [Paper6]
  7. Gresham D, Desai MM, Tucker CM, Jenq HT, Pai DA, Ward A, DeSevo CG, Botstein D, and Dunham MJ. . pmid:19079573. PubMed HubMed [Paper7]
  8. Gresham D and Kruglyak L. . pmid:18670625. PubMed HubMed [Paper8]
  9. Gresham D, Dunham MJ, and Botstein D. . pmid:18347592. PubMed HubMed [Paper9]
  10. Brauer MJ, Huttenhower C, Airoldi EM, Rosenstein R, Matese JC, Gresham D, Boer VM, Troyanskaya OG, and Botstein D. . pmid:17959824. PubMed HubMed [Paper10]
  11. Schacherer J, Ruderfer DM, Gresham D, Dolinski K, Botstein D, and Kruglyak L. . pmid:17389913. PubMed HubMed [Paper11]
  12. Gabriel A, Dapprich J, Kunkel M, Gresham D, Pratt SC, and Dunham MJ. . pmid:17173485. PubMed HubMed [Paper12]
  13. Heck JA, Gresham D, Botstein D, and Alani E. . pmid:16816424. PubMed HubMed [Paper13]
  14. Gresham D, Ruderfer DM, Pratt SC, Schacherer J, Dunham MJ, Botstein D, and Kruglyak L. . pmid:16527929. PubMed HubMed [Paper14]
  15. Morar B, Gresham D, Angelicheva D, Tournev I, Gooding R, Guergueltcheva V, Schmidt C, Abicht A, Lochmuller H, Tordai A, Kalmar L, Nagy M, Karcagi V, Jeanpierre M, Herczegfalvi A, Beeson D, Venkataraman V, Warwick Carter K, Reeve J, de Pablo R, Kucinskas V, and Kalaydjieva L. . pmid:15322984. PubMed HubMed [Paper15]
  16. Zhivotovsky LA, Underhill PA, Cinnioğlu C, Kayser M, Morar B, Kivisild T, Scozzari R, Cruciani F, Destro-Bisol G, Spedini G, Chambers GK, Herrera RJ, Yong KK, Gresham D, Tournev I, Feldman MW, and Kalaydjieva L. . pmid:14691732. PubMed HubMed [Paper16]
  17. Gresham D, Morar B, Underhill PA, Passarino G, Lin AA, Wise C, Angelicheva D, Calafell F, Oefner PJ, Shen P, Tournev I, de Pablo R, Kuĉinskas V, Perez-Lezaun A, Marushiakova E, Popov V, and Kalaydjieva L. . pmid:11704928. PubMed HubMed [Paper17]
  18. Kalaydjieva L, Gresham D, and Calafell F. . pmid:11299048. PubMed HubMed [Paper18]
  19. Chandler D, Angelicheva D, Heather L, Gooding R, Gresham D, Yanakiev P, de Jonge R, Baas F, Dye D, Karagyozov L, Savov A, Blechschmidt K, Keats B, Thomas PK, King RH, Starr A, Nikolova A, Colomer J, Ishpekova B, Tournev I, Urtizberea JA, Merlini L, Butinar D, Chabrol B, Voit T, Baethmann M, Nedkova V, Corches A, and Kalaydjieva L. . pmid:11053686. PubMed HubMed [Paper19]
  20. Kalaydjieva L, Gresham D, Gooding R, Heather L, Baas F, de Jonge R, Blechschmidt K, Angelicheva D, Chandler D, Worsley P, Rosenthal A, King RH, and Thomas PK. . pmid:10831399. PubMed HubMed [Paper20]
All Medline abstracts: PubMed HubMed
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