Griffitts:Restriction digest: Difference between revisions
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! width="30" style="background:#efefef;" | ''Sph'' I | ! width="30" style="background:#efefef;" | ''Sph'' I | ||
! width="30" style="background:#efefef;" | ''Xba'' I | ! width="30" style="background:#efefef;" | ''Xba'' I | ||
|- | |- | ||
| ''Bam'' HI | | '''''Bam'' HI''' | ||
| seq | | seq<sup>1</sup> | ||
| - | | - | ||
| - | | - | ||
Line 283: | Line 281: | ||
| - | | - | ||
|- | |- | ||
| ''Bgl'' II | | '''''Bgl'' II''' | ||
| 3 | | 3 | ||
| ''Bam'' HI | | ''Bam'' HI | ||
| - | | - | ||
| - | | - | ||
Line 301: | Line 298: | ||
| - | | - | ||
|- | |- | ||
| '''''Eco'' RI''' | |||
| ''Eco'' RI | | ''Eco'' RI | ||
| ''Eco'' RI | | ''Eco'' RI | ||
| ''Eco'' RI | | ''Eco'' RI | ||
| - | | - | ||
| - | | - | ||
Line 319: | Line 315: | ||
| - | | - | ||
|- | |- | ||
| ''Eco'' RV | | '''''Eco'' RV''' | ||
| 2 | | 2 | ||
| ''Bam'' HI | | ''Bam'' HI | ||
| 3 | | 3 | ||
| ''Eco'' RI | | ''Eco'' RI | ||
| - | | - | ||
| - | | - | ||
Line 337: | Line 332: | ||
| - | | - | ||
|- | |- | ||
| ''Hind'' III | | '''''Hind'' III''' | ||
| 2 | | 2 | ||
| seq | | seq | ||
Line 343: | Line 338: | ||
| ''Eco'' RI | | ''Eco'' RI | ||
| 2 | | 2 | ||
| - | | - | ||
| - | | - | ||
Line 355: | Line 349: | ||
| - | | - | ||
|- | |- | ||
| ''Kpn'' I | | '''''Kpn'' I''' | ||
| 1 | | 1 | ||
| seq | | seq | ||
Line 362: | Line 356: | ||
| 2 | | 2 | ||
| 2 | | 2 | ||
| - | | - | ||
| - | | - | ||
Line 373: | Line 366: | ||
| - | | - | ||
|- | |- | ||
| ''Nde'' I | | '''''Nde'' I''' | ||
| 4 | | 4 | ||
| ''Bam'' HI | | ''Bam'' HI | ||
Line 381: | Line 374: | ||
| 2 | | 2 | ||
| 1 | | 1 | ||
| - | | - | ||
| - | | - | ||
Line 391: | Line 383: | ||
| - | | - | ||
|- | |- | ||
| ''Pst'' I | | '''''Pst'' I''' | ||
| 3 | | 3 | ||
| ''Bam'' HI | | ''Bam'' HI | ||
Line 400: | Line 392: | ||
| 1 | | 1 | ||
| 3 | | 3 | ||
| - | | - | ||
| - | | - | ||
Line 409: | Line 400: | ||
| - | | - | ||
|- | |- | ||
| ''Sac'' I | | '''''Sac'' I''' | ||
| 1 | | 1 | ||
| seq | | seq | ||
Line 419: | Line 410: | ||
| 4 | | 4 | ||
| 1 | | 1 | ||
| - | | - | ||
| - | | - | ||
Line 427: | Line 417: | ||
| - | | - | ||
|- | |- | ||
| ''Sal'' I | | '''''Sal'' I''' | ||
| seq | | seq | ||
| ''Bam'' HI | | ''Bam'' HI | ||
Line 438: | Line 428: | ||
| 3 | | 3 | ||
| seq | | seq | ||
| - | | - | ||
| - | | - | ||
Line 445: | Line 434: | ||
| - | | - | ||
|- | |- | ||
| ''Sma'' I | | '''''Sma'' I''' | ||
| 4 | | 4 | ||
| seq | | seq | ||
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| - | | - | ||
| - | | - | ||
| - | |||
| - | |||
|- | |||
| '''''Spe'' I''' | |||
| 2 | |||
| ''Bam'' HI | |||
| 2 | |||
| ''Eco'' RI | |||
| 2 | |||
| 2 | |||
| 1 | |||
| 2 | |||
| 2 | |||
| 1 | |||
| seq | |||
| 4 | |||
| - | | - | ||
| - | | - | ||
| - | | - | ||
|- | |- | ||
| '' | | '''''Sph'' I''' | ||
| 2 | | 2 | ||
| ''Bam'' HI | | ''Bam'' HI | ||
Line 476: | Line 481: | ||
| seq | | seq | ||
| 4 | | 4 | ||
| 2 | |||
| - | | - | ||
| - | | - | ||
|- | |||
| '''''Xba'' I''' | |||
| 2 | |||
| seq | |||
| 2 | |||
| 2 | |||
| 2 | |||
| 2 | |||
| 2 | |||
| 2 | |||
| 3 | |||
| 4 | |||
| 3 | |||
| 4 | |||
| 2 | |||
| 2 | |||
| - | | - | ||
| - | |- | ||
| '''''Xho'' I''' | |||
| 2 | |||
| ''Bam'' HI | |||
| 3 | |||
| ''Eco'' RI | |||
| 3 | |||
| 2 | |||
| 1 | |||
| 4 | |||
| 3 | |||
| 1 | |||
| 3 | |||
| 4 | |||
| 2 | |||
| 2 | |||
| 2 | |||
|- | |- | ||
|} | |} | ||
<sup>1</sup> Sequential digest recommended. | |||
<br><br> | <br><br> | ||
''Adapted from New England BioLabs 2005-06 Catalog and Technical Reference.'' | ''Adapted from New England BioLabs 2005-06 Catalog and Technical Reference.'' |
Revision as of 16:26, 8 November 2007
Restriction Digest
Materials
- ddH20
- DNA sample on ice
- Appropriate 10X buffer on ice
- 10X BSA on ice
- Restriction enzyme(s) (see below) on ice
- CIP (keep in freezer until needed)
Recipe
- 12-20 μL DNA depending on concentration
- 4.3 μL appropriate 10X buffer
- 4.0 μL 10X BSA
- Restriction enzyme(s) (see specific enzymes below for exact amounts)
- Don't immerse the tip, draw from the surface to avoid excess enzyme
- Add ddH20 to bring the final volume to 40 μL
Procedure
- Combine ingredients for recipe
- Incubate at 37°C for 2.5 to 8 hours
- If preparing a ligation, add 0.5 μL CIP to the vector 30 minutes prior to ending the reaction
- When the reaction is complete you can store your samples in the -20°C freezer
Enzymes
Enzyme | Amount | Target | Overhang | NEBuffer1 | NEBuffer2 | NEBuffer3 | NEBuffer4 | Other Buffer | T° | BSA |
---|---|---|---|---|---|---|---|---|---|---|
Avr II | c/ctagg | ctag | 100 | 100 | 50 | 100 | None | 37°C | No | |
Bam HI | 1 μL | g/gatcc | gatc | 75 | 100 | 50 | 75 | Bam HI | 37°C | Yes |
Bgl II | a/gatct | gatc | 10 | 75 | 100 | 10 | None | 37°C | No | |
Bst XI | ccannnnn/ntgg | nnnn | 25 | 100 | 100 | 50 | None | 55°C | No | |
Eco RI | g/aattc | aatt | 100 | 100 | 100 | 100 | Eco RI | 37°C | No | |
Eco RV | gat/atc | none | 50 | 75 | 100 | 50 | None | 37°C | Yes | |
Hind III | a/agctt | agct | 50 | 100 | 10 | 50 | None | 37°C | No | |
Kpn I | ggtac/c | gtac | 100 | 75 | 0 | 75 | None | 37°C | Yes | |
Nde I | ca/tatg | ta | 75 | 100 | 75 | 100 | None | 37°C | No | |
Pst I | ctgca/g | tgca | 75 | 75 | 100 | 50 | None | 37°C | Yes | |
Sac I | gagct/c | agct | 100 | 50 | 10 | 100 | None | 37°C | Yes | |
Sal I | g/tcgac | tcga | 0 | 0 | 100 | 0 | None | 37°C | Yes | |
Sma I | ccc/ggg | none | 0 | 0 | 0 | 100 | None | 25°C | No | |
Spe I | a/ctagt | ctag | 75 | 100 | 25 | 75 | None | 37°C | Yes | |
Sph I | gcatg/c | catg | 100 | 100 | 50 | 100 | None | 37°C | No | |
Xba I | 1.5 μL | t/ctaga | ctag | 0 | 100 | 75 | 75 | None | 37°C | Yes |
Xho I | c/tcgag | tcga | 75 | 100 | 100 | 100 | None | 37°C | Yes |
Adapted from New England BioLabs 2005-06 Catalog and Technical Reference.
Double Digests
Enzyme | Avr II | Bam HI | Bgl II | Eco RI | Eco RV | Hind III | Kpn I | Nde I | Pst I | Sac I | Sal I | Sma I | Spe I | Sph I | Xba I |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Bam HI | seq1 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Bgl II | 3 | Bam HI | - | - | - | - | - | - | - | - | - | - | - | - | - |
Eco RI | Eco RI | Eco RI | Eco RI | - | - | - | - | - | - | - | - | - | - | - | - |
Eco RV | 2 | Bam HI | 3 | Eco RI | - | - | - | - | - | - | - | - | - | - | - |
Hind III | 2 | seq | 2 | Eco RI | 2 | - | - | - | - | - | - | - | - | - | - |
Kpn I | 1 | seq | 2 | 2 | 2 | 2 | - | - | - | - | - | - | - | - | - |
Nde I | 4 | Bam HI | 3 | Eco RI | 2 | 2 | 1 | - | - | - | - | - | - | - | - |
Pst I | 3 | Bam HI | 3 | Eco RI | 3 | 2 | 1 | 3 | - | - | - | - | - | - | - |
Sac I | 1 | seq | 2 | seq | 2 | 2 | 1 | 4 | 1 | - | - | - | - | - | - |
Sal I | seq | Bam HI | 3 | Eco RI | 3 | seq | seq | 3 | 3 | seq | - | - | - | - | - |
Sma I | 4 | seq | seq | seq | 4 | 4 | seq | 4 | 4 | 4 | seq | - | - | - | - |
Spe I | 2 | Bam HI | 2 | Eco RI | 2 | 2 | 1 | 2 | 2 | 1 | seq | 4 | - | - | - |
Sph I | 2 | Bam HI | 2 | Eco RI | 2 | 2 | 1 | 2 | 2 | 1 | seq | 4 | 2 | - | - |
Xba I | 2 | seq | 2 | 2 | 2 | 2 | 2 | 2 | 3 | 4 | 3 | 4 | 2 | 2 | - |
Xho I | 2 | Bam HI | 3 | Eco RI | 3 | 2 | 1 | 4 | 3 | 1 | 3 | 4 | 2 | 2 | 2 |
1 Sequential digest recommended.
Adapted from New England BioLabs 2005-06 Catalog and Technical Reference.